Pre_GI: SEQWORD Parameters

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




Query: NC_020054:6111419 Fibrella aestuarina BUZ 2 drat genome

Host Lineage: Fibrella aestuarina; Fibrella; Cytophagaceae; Cytophagales; Bacteroidetes; Bacteria

General Information: The organism was isolated from coastal mud from the North Sea (Fedderwardersiel, Germany). Filamentous marine bacterium.



Query D = 56.5052

Lower LimitUpper Limit



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

IslandHost DescriptionDNeighboursBLASTN
NC_012912:3853377*Dickeya zeae Ech1591, complete genome51.5692NeighboursBLASTN
NC_015690:6595395Paenibacillus mucilaginosus KNP414 chromosome, complete genome51.6249NeighboursBLASTN
NC_017047:4037674Rahnella aquatilis HX2 chromosome, complete genome51.6377NeighboursBLASTN
NC_008570:4594436*Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome51.6501NeighboursBLASTN
NC_015690:7785875Paenibacillus mucilaginosus KNP414 chromosome, complete genome51.7482NeighboursBLASTN
NC_009792:3665369Citrobacter koseri ATCC BAA-895, complete genome51.8195NeighboursBLASTN
NC_009464:2523092Uncultured methanogenic archaeon RC-I, complete genome51.8602NeighboursBLASTN
NC_016051:1803880*Thermococcus sp. AM4 chromosome, complete genome51.9758NeighboursBLASTN
NC_014618:2139639*Enterobacter cloacae SCF1 chromosome, complete genome52.1392NeighboursBLASTN
NC_012796:3267569*Desulfovibrio magneticus RS-1, complete genome52.6121NeighboursBLASTN
NC_015963:117178Enterobacter asburiae LF7a plasmid pENTAS01, complete sequence52.6759NeighboursBLASTN
NC_015501:1762450Porphyromonas asaccharolytica DSM 20707 chromosome, complete52.7445NeighboursBLASTN
NC_012796:2757500Desulfovibrio magneticus RS-1, complete genome52.8173Neighbours
NC_014935:1704816Nitratifractor saLSUginis DSM 16511 chromosome, complete genome52.884NeighboursBLASTN
NC_019960:1198067*Prevotella dentalis DSM 3688 chromosome 1, complete sequence52.9228BLASTN
NC_015424:1689500Aeromonas veronii B565 chromosome, complete genome53.0358NeighboursBLASTN
NC_009348:1475955Aeromonas salmonicida subsp. salmonicida A449, complete genome53.1411NeighboursBLASTN
NC_009483:2086021Geobacter uraniireducens Rf4 chromosome, complete genome53.1981NeighboursBLASTN
NC_019968:382991*Prevotella dentalis DSM 3688 chromosome 2, complete sequence53.2135NeighboursBLASTN
NC_010410:3606826Acinetobacter baumannii AYE, complete genome53.266NeighboursBLASTN
NC_020211:2206500Serratia marcescens WW4, complete genome53.4692NeighboursBLASTN
NC_012796:1645856*Desulfovibrio magneticus RS-1, complete genome53.6076NeighboursBLASTN
NC_017098:1542284*Spirochaeta africana DSM 8902 chromosome, complete genome53.6594NeighboursBLASTN
NC_016816:3333000Pantoea ananatis LMG 5342, complete genome53.7123NeighboursBLASTN
NC_011283:4966471Klebsiella pneumoniae 342 chromosome, complete genome53.735NeighboursBLASTN
NC_013665:2132000Methanocella paludicola SANAE, complete genome53.7697NeighboursBLASTN
NC_009464:379377Uncultured methanogenic archaeon RC-I, complete genome53.8095NeighboursBLASTN
NC_020054:1666263*Fibrella aestuarina BUZ 2 drat genome53.828BLASTN
NC_013850:1658010Klebsiella variicola At-22 chromosome, complete genome53.863NeighboursBLASTN
NC_009838:81913*Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence53.9447NeighboursBLASTN
NC_019968:8397*Prevotella dentalis DSM 3688 chromosome 2, complete sequence53.9678BLASTN
NC_008609:3732192*Pelobacter propionicus DSM 2379, complete genome54.0876NeighboursBLASTN
NC_019897:2908971*Thermobacillus composti KWC4 chromosome, complete genome54.139NeighboursBLASTN
NC_012918:3203136Geobacter sp. M21 chromosome, complete genome54.1503NeighboursBLASTN
NC_015315:1Thermoproteus uzoniensis 768-20 chromosome, complete genome54.1852NeighboursBLASTN
NC_007951:570500*Burkholderia xenovorans LB400 chromosome 1, complete sequence54.2081NeighboursBLASTN
NC_012880:3421500*Dickeya dadantii Ech703, complete genome54.2571NeighboursBLASTN
NC_012660:1804610*Pseudomonas fluorescens SBW25 chromosome, complete genome54.2743NeighboursBLASTN
NC_007517:1468719*Geobacter metallireducens GS-15, complete genome54.2759NeighboursBLASTN
NC_017047:3174588Rahnella aquatilis HX2 chromosome, complete genome54.3115NeighboursBLASTN
NC_016645:1677703Pyrobaculum sp. 1860 chromosome, complete genome54.3781BLASTN
NC_019968:1235500Prevotella dentalis DSM 3688 chromosome 2, complete sequence54.3913NeighboursBLASTN
NC_009464:1479174Uncultured methanogenic archaeon RC-I, complete genome54.4617NeighboursBLASTN
NC_007516:124486*Synechococcus sp. CC9605, complete genome54.9261NeighboursBLASTN
NC_013665:1766158*Methanocella paludicola SANAE, complete genome54.9745NeighboursBLASTN
NC_019968:552440Prevotella dentalis DSM 3688 chromosome 2, complete sequence55.1362BLASTN
NC_007516:774489*Synechococcus sp. CC9605, complete genome55.3327NeighboursBLASTN
NC_009464:2687445Uncultured methanogenic archaeon RC-I, complete genome55.4602NeighboursBLASTN
NC_012796:77071*Desulfovibrio magneticus RS-1, complete genome55.8173NeighboursBLASTN
NC_016885:1784000Pyrobaculum oguniense TE7 chromosome, complete genome55.8536BLASTN
NC_012969:2136243*Methylovorus glucosetrophus SIP3-4 chromosome, complete genome56.0629NeighboursBLASTN
NC_012796:4075583*Desulfovibrio magneticus RS-1, complete genome56.2196NeighboursBLASTN
NC_014562:2563466*Pantoea vagans C9-1 chromosome, complete genome56.2301NeighboursBLASTN
NC_019968:1084288*Prevotella dentalis DSM 3688 chromosome 2, complete sequence56.3063NeighboursBLASTN
NC_020054:6111419Fibrella aestuarina BUZ 2 drat genome56.5052NeighboursBLASTN
NC_012918:1814000*Geobacter sp. M21 chromosome, complete genome56.5214NeighboursBLASTN
NC_013665:1922000Methanocella paludicola SANAE, complete genome56.7527NeighboursBLASTN
NC_005070:904751*Synechococcus sp. WH 8102, complete genome57.149BLASTN
NC_019968:175480*Prevotella dentalis DSM 3688 chromosome 2, complete sequence57.3734BLASTN
NC_011365:592256*Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genome57.3988BLASTN
NC_005070:2374850*Synechococcus sp. WH 8102, complete genome57.4346NeighboursBLASTN
NC_016935:1365463*Paenibacillus mucilaginosus 3016 chromosome, complete genome58.1217NeighboursBLASTN
NC_010506:602000Shewanella woodyi ATCC 51908, complete genome58.2077
NC_007513:75197*Synechococcus sp. CC9902, complete genome58.3342NeighboursBLASTN
NC_012796:1049034*Desulfovibrio magneticus RS-1, complete genome58.3343NeighboursBLASTN
NC_019968:1304450*Prevotella dentalis DSM 3688 chromosome 2, complete sequence58.5325NeighboursBLASTN
NC_009778:2227627*Enterobacter sakazakii ATCC BAA-894, complete genome58.5615BLASTN
NC_015690:632565*Paenibacillus mucilaginosus KNP414 chromosome, complete genome58.9304NeighboursBLASTN
NC_019968:1194489*Prevotella dentalis DSM 3688 chromosome 2, complete sequence59.0569NeighboursBLASTN
NC_002939:2008304Geobacter sulfurreducens PCA, complete genome59.3598NeighboursBLASTN
NC_005070:419261Synechococcus sp. WH 8102, complete genome60.2071NeighboursBLASTN
NC_016024:1876000Candidatus Chloracidobacterium thermophilum B chromosome chromosome60.7385NeighboursBLASTN
NC_012796:3600630*Desulfovibrio magneticus RS-1, complete genome60.9259NeighboursBLASTN