Pre_GI: SEQWORD Parameters

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




Query: NC_012969:2136243 Methylovorus glucosetrophus SIP3-4 chromosome, complete genome

Host Lineage: Methylovorus glucosotrophus; Methylovorus; Methylophilaceae; Methylophilales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Fresh water. This organism is able to utilize methylamines, potentially significant greenhouse gases, as a sole source of energy. Methylovorus strains are strictly aerobic with respiratory metabolism, are obligate or restricted facultative methylotrophs, and utilize methanol as the carbon and energy source. They are found in activated sludge, mud, soil, pond water and plants.



Query GRV_RV = 9.96262

Lower LimitUpper Limit



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

IslandHost DescriptionGRV_RVNeighboursBLASTN
NC_005070:2374850*Synechococcus sp. WH 8102, complete genome9.24431NeighboursBLASTN
NC_012969:2136243*Methylovorus glucosetrophus SIP3-4 chromosome, complete genome9.96262NeighboursBLASTN
NC_007513:75197*Synechococcus sp. CC9902, complete genome10.0916NeighboursBLASTN
NC_005070:419261Synechococcus sp. WH 8102, complete genome10.7477NeighboursBLASTN