Pre_GI: SEQWORD Parameters

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




Query: NC_012969:2136243 Methylovorus glucosetrophus SIP3-4 chromosome, complete genome

Host Lineage: Methylovorus glucosotrophus; Methylovorus; Methylophilaceae; Methylophilales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Fresh water. This organism is able to utilize methylamines, potentially significant greenhouse gases, as a sole source of energy. Methylovorus strains are strictly aerobic with respiratory metabolism, are obligate or restricted facultative methylotrophs, and utilize methanol as the carbon and energy source. They are found in activated sludge, mud, soil, pond water and plants.



Query D = 56.0629

Lower LimitUpper Limit



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

IslandHost DescriptionDNeighboursBLASTN
NC_013592:4511478Dickeya dadantii Ech586, complete genome51.0662NeighboursBLASTN
NC_019968:891904Prevotella dentalis DSM 3688 chromosome 2, complete sequence51.1746BLASTN
NC_016818:2927500Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, complete51.222NeighboursBLASTN
NC_016935:2503071*Paenibacillus mucilaginosus 3016 chromosome, complete genome51.3051NeighboursBLASTN
NC_020054:4161049*Fibrella aestuarina BUZ 2 drat genome51.3251BLASTN
NC_003228:2010643Bacteroides fragilis NCTC 9343, complete genome51.3542NeighboursBLASTN
NC_014541:1165991Ferrimonas balearica DSM 9799 chromosome, complete genome51.4043NeighboursBLASTN
NC_019968:1147409*Prevotella dentalis DSM 3688 chromosome 2, complete sequence51.4094NeighboursBLASTN
NC_016885:2294000*Pyrobaculum oguniense TE7 chromosome, complete genome51.4358NeighboursBLASTN
NC_016051:1681076*Thermococcus sp. AM4 chromosome, complete genome51.499NeighboursBLASTN
NC_012912:3853377*Dickeya zeae Ech1591, complete genome51.5692NeighboursBLASTN
NC_015690:6595395Paenibacillus mucilaginosus KNP414 chromosome, complete genome51.6249NeighboursBLASTN
NC_017047:4037674Rahnella aquatilis HX2 chromosome, complete genome51.6377NeighboursBLASTN
NC_008570:4594436*Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome51.6501NeighboursBLASTN
NC_015690:7785875Paenibacillus mucilaginosus KNP414 chromosome, complete genome51.7482NeighboursBLASTN
NC_009792:3665369Citrobacter koseri ATCC BAA-895, complete genome51.8195NeighboursBLASTN
NC_009464:2523092Uncultured methanogenic archaeon RC-I, complete genome51.8602NeighboursBLASTN
NC_016051:1803880*Thermococcus sp. AM4 chromosome, complete genome51.9758NeighboursBLASTN
NC_014618:2139639*Enterobacter cloacae SCF1 chromosome, complete genome52.1392NeighboursBLASTN
NC_012796:3267569*Desulfovibrio magneticus RS-1, complete genome52.6121NeighboursBLASTN
NC_015963:117178Enterobacter asburiae LF7a plasmid pENTAS01, complete sequence52.6759NeighboursBLASTN
NC_015501:1762450Porphyromonas asaccharolytica DSM 20707 chromosome, complete52.7445NeighboursBLASTN
NC_012796:2757500Desulfovibrio magneticus RS-1, complete genome52.8173Neighbours
NC_014935:1704816Nitratifractor saLSUginis DSM 16511 chromosome, complete genome52.884NeighboursBLASTN
NC_019960:1198067*Prevotella dentalis DSM 3688 chromosome 1, complete sequence52.9228BLASTN
NC_015424:1689500Aeromonas veronii B565 chromosome, complete genome53.0358NeighboursBLASTN
NC_009348:1475955Aeromonas salmonicida subsp. salmonicida A449, complete genome53.1411NeighboursBLASTN
NC_009483:2086021Geobacter uraniireducens Rf4 chromosome, complete genome53.1981NeighboursBLASTN
NC_019968:382991*Prevotella dentalis DSM 3688 chromosome 2, complete sequence53.2135NeighboursBLASTN
NC_010410:3606826Acinetobacter baumannii AYE, complete genome53.266NeighboursBLASTN
NC_020211:2206500Serratia marcescens WW4, complete genome53.4692NeighboursBLASTN
NC_012796:1645856*Desulfovibrio magneticus RS-1, complete genome53.6076NeighboursBLASTN
NC_017098:1542284*Spirochaeta africana DSM 8902 chromosome, complete genome53.6594NeighboursBLASTN
NC_016816:3333000Pantoea ananatis LMG 5342, complete genome53.7123NeighboursBLASTN
NC_011283:4966471Klebsiella pneumoniae 342 chromosome, complete genome53.735NeighboursBLASTN
NC_013665:2132000Methanocella paludicola SANAE, complete genome53.7697NeighboursBLASTN
NC_009464:379377Uncultured methanogenic archaeon RC-I, complete genome53.8095NeighboursBLASTN
NC_020054:1666263*Fibrella aestuarina BUZ 2 drat genome53.828BLASTN
NC_013850:1658010Klebsiella variicola At-22 chromosome, complete genome53.863NeighboursBLASTN
NC_009838:81913*Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence53.9447NeighboursBLASTN
NC_019968:8397*Prevotella dentalis DSM 3688 chromosome 2, complete sequence53.9678BLASTN
NC_008609:3732192*Pelobacter propionicus DSM 2379, complete genome54.0876NeighboursBLASTN
NC_019897:2908971*Thermobacillus composti KWC4 chromosome, complete genome54.139NeighboursBLASTN
NC_012918:3203136Geobacter sp. M21 chromosome, complete genome54.1503NeighboursBLASTN
NC_015315:1Thermoproteus uzoniensis 768-20 chromosome, complete genome54.1852NeighboursBLASTN
NC_007951:570500*Burkholderia xenovorans LB400 chromosome 1, complete sequence54.2081NeighboursBLASTN
NC_012880:3421500*Dickeya dadantii Ech703, complete genome54.2571NeighboursBLASTN
NC_012660:1804610*Pseudomonas fluorescens SBW25 chromosome, complete genome54.2743NeighboursBLASTN
NC_007517:1468719*Geobacter metallireducens GS-15, complete genome54.2759NeighboursBLASTN
NC_017047:3174588Rahnella aquatilis HX2 chromosome, complete genome54.3115NeighboursBLASTN
NC_016645:1677703Pyrobaculum sp. 1860 chromosome, complete genome54.3781BLASTN
NC_019968:1235500Prevotella dentalis DSM 3688 chromosome 2, complete sequence54.3913NeighboursBLASTN
NC_009464:1479174Uncultured methanogenic archaeon RC-I, complete genome54.4617NeighboursBLASTN
NC_007516:124486*Synechococcus sp. CC9605, complete genome54.9261NeighboursBLASTN
NC_013665:1766158*Methanocella paludicola SANAE, complete genome54.9745NeighboursBLASTN
NC_019968:552440Prevotella dentalis DSM 3688 chromosome 2, complete sequence55.1362BLASTN
NC_007516:774489*Synechococcus sp. CC9605, complete genome55.3327NeighboursBLASTN
NC_009464:2687445Uncultured methanogenic archaeon RC-I, complete genome55.4602NeighboursBLASTN
NC_012796:77071*Desulfovibrio magneticus RS-1, complete genome55.8173NeighboursBLASTN
NC_016885:1784000Pyrobaculum oguniense TE7 chromosome, complete genome55.8536BLASTN
NC_012969:2136243*Methylovorus glucosetrophus SIP3-4 chromosome, complete genome56.0629NeighboursBLASTN
NC_012796:4075583*Desulfovibrio magneticus RS-1, complete genome56.2196NeighboursBLASTN
NC_014562:2563466*Pantoea vagans C9-1 chromosome, complete genome56.2301NeighboursBLASTN
NC_019968:1084288*Prevotella dentalis DSM 3688 chromosome 2, complete sequence56.3063NeighboursBLASTN
NC_020054:6111419Fibrella aestuarina BUZ 2 drat genome56.5052NeighboursBLASTN
NC_012918:1814000*Geobacter sp. M21 chromosome, complete genome56.5214NeighboursBLASTN
NC_013665:1922000Methanocella paludicola SANAE, complete genome56.7527NeighboursBLASTN
NC_005070:904751*Synechococcus sp. WH 8102, complete genome57.149BLASTN
NC_019968:175480*Prevotella dentalis DSM 3688 chromosome 2, complete sequence57.3734BLASTN
NC_011365:592256*Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genome57.3988BLASTN
NC_005070:2374850*Synechococcus sp. WH 8102, complete genome57.4346NeighboursBLASTN
NC_016935:1365463*Paenibacillus mucilaginosus 3016 chromosome, complete genome58.1217NeighboursBLASTN
NC_010506:602000Shewanella woodyi ATCC 51908, complete genome58.2077
NC_007513:75197*Synechococcus sp. CC9902, complete genome58.3342NeighboursBLASTN
NC_012796:1049034*Desulfovibrio magneticus RS-1, complete genome58.3343NeighboursBLASTN
NC_019968:1304450*Prevotella dentalis DSM 3688 chromosome 2, complete sequence58.5325NeighboursBLASTN
NC_009778:2227627*Enterobacter sakazakii ATCC BAA-894, complete genome58.5615BLASTN
NC_015690:632565*Paenibacillus mucilaginosus KNP414 chromosome, complete genome58.9304NeighboursBLASTN
NC_019968:1194489*Prevotella dentalis DSM 3688 chromosome 2, complete sequence59.0569NeighboursBLASTN
NC_002939:2008304Geobacter sulfurreducens PCA, complete genome59.3598NeighboursBLASTN
NC_005070:419261Synechococcus sp. WH 8102, complete genome60.2071NeighboursBLASTN
NC_016024:1876000Candidatus Chloracidobacterium thermophilum B chromosome chromosome60.7385NeighboursBLASTN
NC_012796:3600630*Desulfovibrio magneticus RS-1, complete genome60.9259NeighboursBLASTN