Pre_GI: SEQWORD Parameters

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




Query: NC_008826:84218 Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence

Host Lineage: Methylibium petroleiphilum; Methylibium; ; Burkholderiales; Proteobacteria; Bacteria

General Information: Methylibium petroleiphilum strain PM1 (ATCC BAA-1232) was isolated in 1998 from the biofilter of a treatment plant in an oil refinery in Los Angeles, California, USA. Strain PM1 is capable of degrading aromatic compounds such as benzene, toluene and xylenes. Methyl tertiary-butyl ether-degrading bacterium. Methylibium petroleiphilum is a methylotroph (able to utilize reduced one-carbon compounds) able to degrade methyl tertiary-butyl ether (MTBE) under aerobic conditions. MTBE is a gasoline additive used as an oxygenate and to raise the octane number.



Query D = 22.1689

Lower LimitUpper Limit



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

IslandHost DescriptionDNeighboursBLASTN
NC_008596:4152916Mycobacterium smegmatis str. MC2 155, complete genome17.1693NeighboursBLASTN
NC_015638:62454Lacinutrix sp. 5H-3-7-4 chromosome, complete genome17.1693NeighboursBLASTN
NC_010003:335348*Petrotoga mobilis SJ95, complete genome17.1723NeighboursBLASTN
NC_017353:2353665Staphylococcus lugdunensis N920143, complete genome17.1723NeighboursBLASTN
NC_019949:569426Mycoplasma cynos C142 complete genome17.1748NeighboursBLASTN
NC_015259:1803266*Polymorphum gilvum SL003B-26A1 chromosome, complete genome17.1784NeighboursBLASTN
NC_002978:918000*Wolbachia endosymbiont of Drosophila melanogaster, complete genome17.1814NeighboursBLASTN
NC_008262:2025699Clostridium perfringens SM101, complete genome17.1814NeighboursBLASTN
NC_011894:7035285Methylobacterium nodulans ORS 2060, complete genome17.1814NeighboursBLASTN
NC_009613:1825449*Flavobacterium psychrophilum JIP02/86, complete genome17.1834NeighboursBLASTN
NC_011894:7702000Methylobacterium nodulans ORS 2060, complete genome17.1838NeighboursBLASTN
NC_015656:2484749*Frankia symbiont of Datisca glomerata chromosome, complete genome17.1857NeighboursBLASTN
NC_009515:967600Methanobrevibacter smithii ATCC 35061, complete genome17.1863NeighboursBLASTN
NC_008268:6149576*Rhodococcus sp. RHA1, complete genome17.1864NeighboursBLASTN
NC_007575:319119*Sulfurimonas denitrificans DSM 1251, complete genome17.1875NeighboursBLASTN
NC_017275:377800Sulfolobus islandicus HVE10/4 chromosome, complete genome17.1875NeighboursBLASTN
NC_012988:731790*Methylobacterium extorquens DM4, complete genome17.1881NeighboursBLASTN
NC_009338:912894*Mycobacterium gilvum PYR-GCK chromosome, complete genome17.1889NeighboursBLASTN
NC_010674:615963Clostridium botulinum B str. Eklund 17B, complete genome17.19NeighboursBLASTN
NC_008277:387811*Borrelia afzelii PKo, complete genome17.1902NeighboursBLASTN
NC_010003:2056000Petrotoga mobilis SJ95, complete genome17.1936NeighboursBLASTN
NC_003106:1786000Sulfolobus tokodaii str. 7, complete genome17.196NeighboursBLASTN
NC_010677:96470*Francisella tularensis subsp. mediasiatica FSC147, complete genome17.1962NeighboursBLASTN
NC_013524:392089Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genome17.1986NeighboursBLASTN
NC_015638:3113253Lacinutrix sp. 5H-3-7-4 chromosome, complete genome17.1997NeighboursBLASTN
NC_020291:5409587Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome17.1997NeighboursBLASTN
NC_010725:4035397*Methylobacterium populi BJ001, complete genome17.2014NeighboursBLASTN
NC_014909:662500*Candidatus Blochmannia vafer str. BVAF chromosome, complete genome17.2049NeighboursBLASTN
NC_018681:6977670Nocardia brasiliensis ATCC 700358 chromosome, complete genome17.2071NeighboursBLASTN
NC_011894:6708970Methylobacterium nodulans ORS 2060, complete genome17.2088NeighboursBLASTN
NC_012808:4098465Methylobacterium extorquens AM1, complete genome17.2102NeighboursBLASTN
NC_013124:1107202*Acidimicrobium ferrooxidans DSM 10331, complete genome17.214NeighboursBLASTN
NC_013440:1044100Haliangium ochraceum DSM 14365, complete genome17.2164NeighboursBLASTN
NC_015638:2045500*Lacinutrix sp. 5H-3-7-4 chromosome, complete genome17.217NeighboursBLASTN
NC_004557:2607073Clostridium tetani E88, complete genome17.2179NeighboursBLASTN
NC_014552:277510Mycoplasma fermentans JER chromosome, complete genome17.2179NeighboursBLASTN
NC_009257:775538*Francisella tularensis subsp. tularensis WY96-3418 chromosome,17.2179NeighboursBLASTN
NC_005061:96536*Candidatus Blochmannia floridanus, complete genome17.2218NeighboursBLASTN
NC_011565:190406*Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,17.224NeighboursBLASTN
NC_008271:35909Rhodococcus sp. RHA1 plasmid pRHL3, complete sequence17.224NeighboursBLASTN
NC_015380:717990Candidatus Pelagibacter sp. IMCC9063 chromosome, complete genome17.224NeighboursBLASTN
NC_015518:761380*Acidianus hospitalis W1 chromosome, complete genome17.2247NeighboursBLASTN
NC_015376:3249773Burkholderia gladioli BSR3 chromosome chromosome 2, complete17.2262NeighboursBLASTN
NC_002952:1349006Staphylococcus aureus subsp. aureus MRSA252, complete genome17.227NeighboursBLASTN
NC_002162:643446*Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome17.228NeighboursBLASTN
NC_014814:483444Mycobacterium sp. Spyr1 chromosome, complete genome17.2301NeighboursBLASTN
NC_000962:3474000Mycobacterium tuberculosis H37Rv, complete genome17.2321NeighboursBLASTN
NC_013515:347671*Streptobacillus moniliformis DSM 12112, complete genome17.2359NeighboursBLASTN
NC_009495:3309550*Clostridium botulinum A str. ATCC 3502 chromosome, complete genome17.2361NeighboursBLASTN
NC_005295:1067421Ehrlichia ruminantium str. Welgevonden, complete genome17.2388NeighboursBLASTN
NC_010677:1296000Francisella tularensis subsp. mediasiatica FSC147, complete genome17.2392NeighboursBLASTN
NC_007777:5087405*Frankia sp. CcI3, complete genome17.2394NeighboursBLASTN
NC_014931:4234288*Variovorax paradoxus EPS chromosome, complete genome17.2409NeighboursBLASTN
NC_011894:2503639Methylobacterium nodulans ORS 2060, complete genome17.2422NeighboursBLASTN
NC_012416:979484*Wolbachia sp. wRi, complete genome17.2422NeighboursBLASTN
NC_008313:1956500Ralstonia eutropha H16 chromosome 1, complete sequence17.2434NeighboursBLASTN
NC_014217:3024961*Starkeya novella DSM 506 chromosome, complete genome17.2463NeighboursBLASTN
NC_010172:31264Methylobacterium extorquens PA1, complete genome17.2468NeighboursBLASTN
NC_020291:2218425Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome17.2478NeighboursBLASTN
NC_009634:547995Methanococcus vannielii SB chromosome, complete genome17.2483NeighboursBLASTN
NC_009617:3263413Clostridium beijerinckii NCIMB 8052 chromosome, complete genome17.2483NeighboursBLASTN
NC_012416:852000*Wolbachia sp. wRi, complete genome17.2483NeighboursBLASTN
NC_017278:1720371Thermus sp. CCB_US3_UF1 chromosome, complete genome17.2503NeighboursBLASTN
NC_011126:922182*Hydrogenobaculum sp. Y04AAS1, complete genome17.2513NeighboursBLASTN
NC_011894:983572Methylobacterium nodulans ORS 2060, complete genome17.252NeighboursBLASTN
NC_008599:1291300*Campylobacter fetus subsp. fetus 82-40, complete genome17.2543NeighboursBLASTN
NC_011961:528837Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence17.2544NeighboursBLASTN
NC_014924:725380Pseudoxanthomonas suwonensis 11-1 chromosome, complete genome17.2548NeighboursBLASTN
NC_008705:1557711Mycobacterium sp. KMS, complete genome17.2564NeighboursBLASTN
NC_011963:1482042*Rhodobacter sphaeroides KD131 chromosome 1, complete sequence17.2572NeighboursBLASTN
NC_009699:2875386Clostridium botulinum F str. Langeland chromosome, complete genome17.2574NeighboursBLASTN
NC_014166:716000*Arcobacter nitrofigilis DSM 7299 chromosome, complete genome17.2605Neighbours
NC_014391:3103000*Micromonospora aurantiaca ATCC 27029 chromosome, complete genome17.2609NeighboursBLASTN
NC_008819:785447Prochlorococcus marinus str. NATL1A, complete genome17.2635NeighboursBLASTN
NC_005295:1146500*Ehrlichia ruminantium str. Welgevonden, complete genome17.2635NeighboursBLASTN
NC_005295:647275Ehrlichia ruminantium str. Welgevonden, complete genome17.2635NeighboursBLASTN
NC_014751:225477*Mycoplasma leachii PG50 chromosome, complete genome17.2653NeighboursBLASTN
NC_008543:2666846Burkholderia cenocepacia HI2424 chromosome 2, complete sequence17.2658NeighboursBLASTN
NC_007205:1059684*Candidatus Pelagibacter ubique HTCC1062, complete genome17.266NeighboursBLASTN
NC_010612:957786Mycobacterium marinum M, complete genome17.2665NeighboursBLASTN
NC_017904:3415700Mycobacterium sp. MOTT36Y chromosome, complete genome17.2706NeighboursBLASTN
NC_020126:8287556Myxococcus stipitatus DSM 14675, complete genome17.2708NeighboursBLASTN
NC_014215:1929000*Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,17.2726NeighboursBLASTN
NC_010505:3690000*Methylobacterium radiotolerans JCM 2831, complete genome17.2731NeighboursBLASTN
NC_017243:1229597*Brachyspira intermedia PWS/A chromosome, complete genome17.2735NeighboursBLASTN
NC_009075:1638789Burkholderia pseudomallei 668 chromosome II, complete sequence17.2775NeighboursBLASTN
NC_020291:4944835Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome17.2782NeighboursBLASTN
NC_016114:1710938Streptomyces flavogriseus ATCC 33331 chromosome, complete genome17.2787NeighboursBLASTN
NC_010674:1672990Clostridium botulinum B str. Eklund 17B, complete genome17.2787NeighboursBLASTN
NC_015635:4097711Microlunatus phosphovorus NM-1, complete genome17.2816NeighboursBLASTN
NC_010172:3946644*Methylobacterium extorquens PA1, complete genome17.2817NeighboursBLASTN
NC_008313:2629281*Ralstonia eutropha H16 chromosome 1, complete sequence17.2817NeighboursBLASTN
NC_017338:436711Staphylococcus aureus subsp. aureus JKD6159 chromosome, complete17.2817NeighboursBLASTN
NC_017281:1645903*Campylobacter jejuni subsp. jejuni S3 chromosome, complete genome17.2833NeighboursBLASTN
NC_020291:5808856Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome17.2841NeighboursBLASTN
NC_008369:557941Francisella tularensis subsp. holarctica OSU18, complete genome17.2848NeighboursBLASTN
NC_009714:727679*Campylobacter hominis ATCC BAA-381, complete genome17.286NeighboursBLASTN
NC_014640:2754894Achromobacter xylosoxidans A8 chromosome, complete genome17.2868NeighboursBLASTN
NC_011886:2696671Arthrobacter chlorophenolicus A6, complete genome17.2888NeighboursBLASTN
NC_010520:3674883*Clostridium botulinum A3 str. Loch Maree, complete genome17.2909NeighboursBLASTN
NC_007493:546000*Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence17.2909NeighboursBLASTN
NC_008825:4025705*Methylibium petroleiphilum PM1, complete genome17.2909NeighboursBLASTN
NC_006055:689956*Mesoplasma florum L1, complete genome17.2924NeighboursBLASTN
NC_016768:3774105Mycobacterium tuberculosis KZN 4207 chromosome, complete genome17.2939NeighboursBLASTN
NC_018750:7540450Streptomyces venezuelae ATCC 10712, complete genome17.2969NeighboursBLASTN
NC_012811:62867Methylobacterium extorquens AM1 megaplasmid, complete sequence17.2969NeighboursBLASTN
NC_009142:6199326*Saccharopolyspora erythraea NRRL 2338, complete genome17.297NeighboursBLASTN
NC_016111:2912962Streptomyces cattleya NRRL 8057, complete genome17.3NeighboursBLASTN
NC_006087:1483761*Leifsonia xyli subsp. xyli str. CTCB07, complete genome17.3013NeighboursBLASTN
NC_015726:2923969Cupriavidus necator N-1 chromosome 1, complete sequence17.303NeighboursBLASTN
NC_008268:7180663Rhodococcus sp. RHA1, complete genome17.3046NeighboursBLASTN
NC_008262:2150944*Clostridium perfringens SM101, complete genome17.305NeighboursBLASTN
NC_016114:2612465Streptomyces flavogriseus ATCC 33331 chromosome, complete genome17.3073NeighboursBLASTN
NC_020126:7661551*Myxococcus stipitatus DSM 14675, complete genome17.3082NeighboursBLASTN
NC_009484:98250Acidiphilium cryptum JF-5 chromosome, complete genome17.3091NeighboursBLASTN
NC_007794:3218729*Novosphingobium aromaticivorans DSM 12444, complete genome17.3113NeighboursBLASTN
NC_012225:2198987Brachyspira hyodysenteriae WA1, complete genome17.3117NeighboursBLASTN
NC_010512:951527Burkholderia cenocepacia MC0-3 chromosome 3, complete sequence17.3121NeighboursBLASTN
NC_003106:1367404*Sulfolobus tokodaii str. 7, complete genome17.3121NeighboursBLASTN
NC_009488:1992645Orientia tsutsugamushi str. Boryong, complete genome17.3152NeighboursBLASTN
NC_016582:10287865*Streptomyces bingchenggensis BCW-1 chromosome, complete genome17.3152NeighboursBLASTN
NC_014330:2026193Brachyspira pilosicoli 95/1000 chromosome, complete genome17.3162NeighboursBLASTN
NC_011047:443475*Candidatus Phytoplasma mali, complete genome17.3163NeighboursBLASTN
NC_013159:2098500Saccharomonospora viridis DSM 43017, complete genome17.3166NeighboursBLASTN
NC_013595:1100230*Streptosporangium roseum DSM 43021, complete genome17.321NeighboursBLASTN
NC_006461:953817Thermus thermophilus HB8, complete genome17.3213NeighboursBLASTN
NC_015957:639774*Streptomyces violaceusniger Tu 4113 chromosome, complete genome17.3251NeighboursBLASTN
NC_008148:672608Rubrobacter xylanophilus DSM 9941, complete genome17.3258NeighboursBLASTN
NC_003366:981105Clostridium perfringens str. 13, complete genome17.3273NeighboursBLASTN
NC_010338:588000Caulobacter sp. K31, complete genome17.3273NeighboursBLASTN
NC_020411:905335*Hydrogenobaculum sp. HO, complete genome17.3273NeighboursBLASTN
NC_016632:74569*Serratia symbiotica str. 'Cinara cedri' chromosome, complete17.3273BLASTN
NC_011963:742158Rhodobacter sphaeroides KD131 chromosome 1, complete sequence17.3294NeighboursBLASTN
NC_003366:2286083*Clostridium perfringens str. 13, complete genome17.3304NeighboursBLASTN
NC_020291:1266885Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome17.333NeighboursBLASTN
NC_015711:4033975Myxococcus fulvus HW-1 chromosome, complete genome17.3334Neighbours