Pre_GI: OUP Neighbours

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Query: NC_020134:343402 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

D: 26.3801

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.

Number of Neighbours: 22

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_020134:586840Clostridium stercorarium subsp. stercorarium DSM 8532, complete87.451 %Subject ←→ Query26.3771
NC_020134:301500*Clostridium stercorarium subsp. stercorarium DSM 8532, complete87.5735 %Subject ←→ Query26.7931
NC_020134:1173000*Clostridium stercorarium subsp. stercorarium DSM 8532, complete86.7862 %Subject ←→ Query27.7639
NC_015703:1992000*Runella slithyformis DSM 19594 chromosome, complete genome75.3799 %Subject ←→ Query31.5564
NC_017190:871352Bacillus amyloliquefaciens LL3 chromosome, complete genome75.9007 %Subject ←→ Query35.6367
NC_014624:1768226Eubacterium limosum KIST612 chromosome, complete genome75.1716 %Subject ←→ Query35.9105
NC_015500:2329957*Treponema brennaborense DSM 12168 chromosome, complete genome76.3848 %Subject Query36.8007
NC_017190:852171Bacillus amyloliquefaciens LL3 chromosome, complete genome76.2929 %Subject Query37.3966
NC_016641:2894899Paenibacillus terrae HPL-003 chromosome, complete genome77.454 %Subject Query37.4094
NC_017188:2221705Bacillus amyloliquefaciens TA208 chromosome, complete genome77.7298 %Subject Query39.9662
NC_017191:2223740Bacillus amyloliquefaciens XH7 chromosome, complete genome78.1832 %Subject Query41.0813