Pre_GI: OUP Neighbours

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Query: NC_017430:49052 Chlamydia trachomatis G/11222 chromosome, complete genome

D: 23.3341

Host Lineage: Chlamydia trachomatis; Chlamydia; Chlamydiaceae; Chlamydiales; Chlamydiae; Bacteria

General Information: Bacteria belonging to the Chlamydiales group are obligate intracellular parasites of eukaryotic cells. They are found within vertebrates, invertebrate cells, and amoebae hosts. Chlamydiae are one of the commonest causes of sexually transmitted diseases (STDs) and if left untreated may cause infertility in women. They are transmitted by direct contact or aerosols, and can cause various diseases, while also being able to coexist with the host in an apparently asymptomatic state. This species causes infection that leads to blindness and sexually transmitted diseases in humans. There are 15 serovariants that preferentially cause disease in either the eye or the urogenital tract. The trachoma (infection of the mucous membrane of the eyelids) biovars are noninvasive and can cause blinding trachoma (variants A, B, Ba, and C), or sexually transmitted diseases (variants, D, E, F, G, H, I, J, and K). The lymphogranuloma venereum biovars (variants L1, L2, and L3) can cross the epithelial cells of mucous membranes and then travel through the lymphatic system where they multiply within mononuclear phagocytes found within the lymph nodes.

Number of Neighbours: 162

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_019814:320260*Candidatus Kinetoplastibacterium blastocrithidii (ex Strigomonas79.3137 %Subject ←→ Query16.923
NC_020299:532000*Candidatus Kinetoplastibacterium oncopeltii TCC290E, complete78.0821 %Subject ←→ Query19.4295
NC_017292:716050Chlamydophila psittaci 02DC15 chromosome, complete genome83.5141 %Subject ←→ Query20.3763
NC_019814:678404*Candidatus Kinetoplastibacterium blastocrithidii (ex Strigomonas78.7745 %Subject ←→ Query21.1667
NC_017290:716092Chlamydophila psittaci 08DC60 chromosome, complete genome83.0545 %Subject ←→ Query21.2589
NC_017289:716085Chlamydophila psittaci 01DC11 chromosome, complete genome83.0239 %Subject ←→ Query21.5649
NC_020248:708024Chlamydophila psittaci Mat116, complete genome83.0484 %Subject ←→ Query21.6531
NC_017287:710104Chlamydophila psittaci 6BC chromosome, complete genome83.5938 %Subject ←→ Query21.8446
NC_015470:1096232*Chlamydophila psittaci 6BC chromosome, complete genome84.0441 %Subject ←→ Query21.9084
NC_005295:272708*Ehrlichia ruminantium str. Welgevonden, complete genome75.0888 %Subject ←→ Query21.9494
NC_017291:829577*Chlamydophila psittaci C19/98 chromosome, complete genome83.3762 %Subject ←→ Query21.9784
NC_017292:834749*Chlamydophila psittaci 02DC15 chromosome, complete genome83.2904 %Subject ←→ Query22.2519
NC_017285:671546Chlamydophila pneumoniae LPCoLN chromosome, complete genome84.182 %Subject ←→ Query22.2742
NC_017289:834781*Chlamydophila psittaci 01DC11 chromosome, complete genome83.0944 %Subject ←→ Query22.2915
NC_017285:913000*Chlamydophila pneumoniae LPCoLN chromosome, complete genome84.4056 %Subject ←→ Query22.3654
NC_017430:350668*Chlamydia trachomatis G/11222 chromosome, complete genome86.1918 %Subject ←→ Query22.7657
NC_017291:713265Chlamydophila psittaci C19/98 chromosome, complete genome82.9994 %Subject ←→ Query22.8093
NC_020248:268000Chlamydophila psittaci Mat116, complete genome84.0717 %Subject ←→ Query22.874
NC_017289:269301*Chlamydophila psittaci 01DC11 chromosome, complete genome83.704 %Subject ←→ Query22.8995
NC_017291:269297*Chlamydophila psittaci C19/98 chromosome, complete genome83.7408 %Subject ←→ Query22.9117
NC_017290:269300*Chlamydophila psittaci 08DC60 chromosome, complete genome83.7163 %Subject ←→ Query22.933
NC_017292:269297*Chlamydophila psittaci 02DC15 chromosome, complete genome83.7255 %Subject ←→ Query22.9363
NC_012686:356865*Chlamydia trachomatis B/Jali20/OT chromosome, complete genome85.5913 %Subject ←→ Query22.9481
NC_016620:341699Bacteriovorax marinus SJ, complete genome80.144 %Subject ←→ Query23.0191
NC_019907:287339*Liberibacter crescens BT-1 chromosome, complete genome78.3762 %Subject ←→ Query23.1609
NC_017440:355205*Chlamydia trachomatis G/11074 chromosome, complete genome85.6311 %Subject ←→ Query23.2794
NC_017432:355205*Chlamydia trachomatis G/9301 chromosome, complete genome85.6311 %Subject ←→ Query23.2794
NC_017439:45953Chlamydia trachomatis E/150 chromosome, complete genome94.0319 %Subject ←→ Query23.3524
NC_017289:1096765*Chlamydophila psittaci 01DC11 chromosome, complete genome83.9216 %Subject ←→ Query23.3585
NC_017290:1096599*Chlamydophila psittaci 08DC60 chromosome, complete genome84.1238 %Subject ←→ Query23.5768
NC_010287:957862*Chlamydia trachomatis 434/Bu, complete genome82.6134 %Subject ←→ Query23.6199
NC_012687:641808*Chlamydia trachomatis B/TZ1A828/OT chromosome, complete genome83.0423 %Subject ←→ Query23.6989
NC_017439:451535*Chlamydia trachomatis E/150 chromosome, complete genome85.6587 %Subject ←→ Query23.7111
NC_019907:920797*Liberibacter crescens BT-1 chromosome, complete genome79.2463 %Subject ←→ Query23.7676
NC_017431:451551*Chlamydia trachomatis E/11023 chromosome, complete genome85.6587 %Subject ←→ Query23.9178
NC_017287:269205*Chlamydophila psittaci 6BC chromosome, complete genome84.2616 %Subject ←→ Query24.068
NC_017437:641843*Chlamydia trachomatis A2497 chromosome, complete genome83.0331 %Subject ←→ Query24.0698
NC_016798:641842*Chlamydia trachomatis A2497, complete genome83.0423 %Subject ←→ Query24.0698
NC_017437:360949*Chlamydia trachomatis A2497 chromosome, complete genome85.5821 %Subject ←→ Query24.0844
NC_017436:639268*Chlamydia trachomatis D-LC chromosome, complete genome83.3333 %Subject ←→ Query24.1184
NC_017292:1096730*Chlamydophila psittaci 02DC15 chromosome, complete genome83.8909 %Subject ←→ Query24.147
NC_016798:360945*Chlamydia trachomatis A2497, complete genome85.6311 %Subject ←→ Query24.159
NC_012687:586657*Chlamydia trachomatis B/TZ1A828/OT chromosome, complete genome82.0711 %Subject ←→ Query24.1656
NC_010280:957890*Chlamydia trachomatis L2b/UCH-1/proctitis, complete genome82.6746 %Subject ←→ Query24.1792
NC_000117:639268*Chlamydia trachomatis D/UW-3/CX, complete genome83.3333 %Subject ←→ Query24.2461
NC_019907:467377*Liberibacter crescens BT-1 chromosome, complete genome78.6091 %Subject ←→ Query24.2863
NC_012686:586714*Chlamydia trachomatis B/Jali20/OT chromosome, complete genome82.1538 %Subject ←→ Query24.2972
NC_012686:641870*Chlamydia trachomatis B/Jali20/OT chromosome, complete genome83.1127 %Subject ←→ Query24.3069
NC_016798:586689*Chlamydia trachomatis A2497, complete genome82.1691 %Subject ←→ Query24.389
NC_017440:583392*Chlamydia trachomatis G/11074 chromosome, complete genome82.3836 %Subject ←→ Query24.39
NC_017437:586692*Chlamydia trachomatis A2497 chromosome, complete genome82.1691 %Subject ←→ Query24.4163
NC_007429:585774*Chlamydia trachomatis A/HAR-13, complete genome81.875 %Subject ←→ Query24.5136
NC_017291:1093946*Chlamydophila psittaci C19/98 chromosome, complete genome83.9216 %Subject ←→ Query24.62
NC_017440:45965Chlamydia trachomatis G/11074 chromosome, complete genome94.4424 %Subject ←→ Query24.7325
NC_017432:45965Chlamydia trachomatis G/9301 chromosome, complete genome94.4363 %Subject ←→ Query24.7325
NC_017429:45965Chlamydia trachomatis G/9768 chromosome, complete genome94.4547 %Subject ←→ Query24.7325
NC_017432:583328*Chlamydia trachomatis G/9301 chromosome, complete genome82.3254 %Subject ←→ Query24.7963
NC_017287:1096144*Chlamydophila psittaci 6BC chromosome, complete genome83.9461 %Subject ←→ Query24.8231
NC_017429:583327*Chlamydia trachomatis G/9768 chromosome, complete genome82.3284 %Subject ←→ Query24.845
NC_017429:362482Chlamydia trachomatis G/9768 chromosome, complete genome85.2267 %Subject ←→ Query24.9696
NC_012686:49643Chlamydia trachomatis B/Jali20/OT chromosome, complete genome95.8915 %Subject ←→ Query25.0821
NC_017431:583529*Chlamydia trachomatis E/11023 chromosome, complete genome82.6716 %Subject ←→ Query25.1179
NC_017432:639531*Chlamydia trachomatis G/9301 chromosome, complete genome82.9167 %Subject ←→ Query25.1398
NC_017429:639530*Chlamydia trachomatis G/9768 chromosome, complete genome82.9228 %Subject ←→ Query25.1398
NC_012687:49640Chlamydia trachomatis B/TZ1A828/OT chromosome, complete genome94.8438 %Subject ←→ Query25.1459
NC_017437:49643Chlamydia trachomatis A2497 chromosome, complete genome95.3125 %Subject ←→ Query25.1459
NC_017439:639694*Chlamydia trachomatis E/150 chromosome, complete genome82.8125 %Subject ←→ Query25.1459
NC_016798:49643Chlamydia trachomatis A2497, complete genome94.7733 %Subject ←→ Query25.1459
NC_017439:583513*Chlamydia trachomatis E/150 chromosome, complete genome82.6624 %Subject ←→ Query25.2614
NC_017431:639710*Chlamydia trachomatis E/11023 chromosome, complete genome82.8186 %Subject ←→ Query25.456
NC_017440:639595*Chlamydia trachomatis G/11074 chromosome, complete genome82.981 %Subject ←→ Query25.5958
NC_007429:49647Chlamydia trachomatis A/HAR-13, complete genome94.9418 %Subject ←→ Query25.608
NC_017430:582000*Chlamydia trachomatis G/11222 chromosome, complete genome83.6642 %Subject ←→ Query25.8512
NC_015713:1927297Simkania negevensis Z chromosome gsn.131, complete genome75.8395 %Subject ←→ Query26.006
NC_020248:1087940*Chlamydophila psittaci Mat116, complete genome83.9491 %Subject ←→ Query26.0899
NC_015408:561987Chlamydophila pecorum E58 chromosome, complete genome80.5821 %Subject ←→ Query26.3011
NC_017434:581988*Chlamydia trachomatis D-EC chromosome, complete genome82.9596 %Subject ←→ Query26.5503
NC_017436:581986*Chlamydia trachomatis D-LC chromosome, complete genome82.9596 %Subject ←→ Query26.5503
NC_015744:900000*Chlamydia trachomatis L2c chromosome, complete genome83.0821 %Subject ←→ Query27.6386
NC_013009:225722*Neorickettsia risticii str. Illinois, complete genome77.5674 %Subject ←→ Query30.3647
NC_007355:2838952*Methanosarcina barkeri str. fusaro chromosome 1, complete sequence77.6746 %Subject ←→ Query31.5471