Pre_GI: OUP Neighbours

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Query: NC_016848:748873 Treponema pallidum subsp. pertenue str. CDC2 chromosome, complete

D: 41.8665

Host Lineage: Treponema pallidum; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was isolated in Akorabo, Ghana in 1980. Treponema pallidum subsp. pertenue causes chronic and disfiguring illness called yaws. The disease starts as a skin infection causing persistent ulcers and progresses to form tumor-like masses. This disease tends to infect children and is common in rural areas in Africa, Southeast Asia and equatorial South America.

Number of Neighbours: 82




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_015714:1*Treponema paraluiscuniculi Cuniculi A chromosome, complete genome75.2359 %Subject ←→ Query32.2258
NC_015714:238891*Treponema paraluiscuniculi Cuniculi A chromosome, complete genome79.1023 %Subject ←→ Query33.229
NC_016842:1*Treponema pallidum subsp. pertenue str. SamoaD chromosome, complete78.8235 %Subject ←→ Query33.6701
NC_010741:949732*Treponema pallidum subsp. pallidum SS14, complete genome79.9877 %Subject ←→ Query33.6941
NC_016842:748419*Treponema pallidum subsp. pertenue str. SamoaD chromosome, complete98.3027 %Subject ←→ Query33.7123
NC_016843:1*Treponema pallidum subsp. pertenue str. Gauthier chromosome,78.8113 %Subject ←→ Query33.7521
NC_000919:107373*Treponema pallidum subsp. pallidum str. Nichols, complete genome80.7812 %Subject ←→ Query33.8461
NC_010741:107370*Treponema pallidum subsp. pallidum SS14, complete genome80.7812 %Subject ←→ Query33.9494
NC_017268:1*Treponema pallidum subsp. pallidum str. Chicago chromosome,78.75 %Subject ←→ Query34.0577
NC_021508:107384*Treponema pallidum subsp. pallidum SS14, complete genome80.7812 %Subject ←→ Query34.2656
NC_015714:943178*Treponema paraluiscuniculi Cuniculi A chromosome, complete genome76.9914 %Subject ←→ Query34.2929
NC_010741:775000*Treponema pallidum subsp. pallidum SS14, complete genome78.6581 %Subject ←→ Query34.3142
NC_017268:949543*Treponema pallidum subsp. pallidum str. Chicago chromosome,80.0031 %Subject ←→ Query34.6634
NC_021508:949769*Treponema pallidum subsp. pallidum SS14, complete genome79.9847 %Subject ←→ Query34.8452
NC_016844:107382*Treponema pallidum subsp. pallidum DAL-1 chromosome, complete80.7843 %Subject ←→ Query34.9891
NC_017268:107387*Treponema pallidum subsp. pallidum str. Chicago chromosome,80.7843 %Subject ←→ Query35.0316
NC_000919:948287*Treponema pallidum subsp. pallidum str. Nichols, complete genome79.9694 %Subject ←→ Query35.037
NC_016842:949899*Treponema pallidum subsp. pertenue str. SamoaD chromosome, complete77.0772 %Subject ←→ Query35.1975
NC_000919:746875Treponema pallidum subsp. pallidum str. Nichols, complete genome98.4038 %Subject ←→ Query35.1998
NC_016843:775371*Treponema pallidum subsp. pertenue str. Gauthier chromosome,82.0098 %Subject ←→ Query35.3265
NC_016848:775822*Treponema pallidum subsp. pertenue str. CDC2 chromosome, complete78.9399 %Subject ←→ Query35.369
NC_015714:768500*Treponema paraluiscuniculi Cuniculi A chromosome, complete genome82.1906 %Subject ←→ Query35.483
NC_016844:950231*Treponema pallidum subsp. pallidum DAL-1 chromosome, complete80.0031 %Subject ←→ Query35.5106
NC_017268:775000*Treponema pallidum subsp. pallidum str. Chicago chromosome,79.1391 %Subject ←→ Query35.5446
NC_016843:950000*Treponema pallidum subsp. pertenue str. Gauthier chromosome,77.0803 %Subject ←→ Query35.6176
NC_016844:775334*Treponema pallidum subsp. pallidum DAL-1 chromosome, complete82.1875 %Subject ←→ Query35.8628
NC_021508:775264*Treponema pallidum subsp. pallidum SS14, complete genome79.0686 %Subject ←→ Query36.5637
NC_015714:741044*Treponema paraluiscuniculi Cuniculi A chromosome, complete genome93.0699 %Subject ←→ Query36.7394
NC_016848:950353*Treponema pallidum subsp. pertenue str. CDC2 chromosome, complete77.0833 %Subject ←→ Query36.963
NC_000919:773784Treponema pallidum subsp. pallidum str. Nichols, complete genome79.0564 %Subject ←→ Query36.964
NC_021508:12543*Treponema pallidum subsp. pallidum SS14, complete genome79.1085 %Subject ←→ Query36.9954
NC_016844:12545*Treponema pallidum subsp. pallidum DAL-1 chromosome, complete79.136 %Subject ←→ Query37.0075
NC_010741:745357Treponema pallidum subsp. pallidum SS14, complete genome94.7855 %Subject ←→ Query37.2477
NC_000919:12545*Treponema pallidum subsp. pallidum str. Nichols, complete genome79.1483 %Subject ←→ Query37.2678
NC_010741:12542*Treponema pallidum subsp. pallidum SS14, complete genome79.1483 %Subject ←→ Query37.3966
NC_016848:12548*Treponema pallidum subsp. pertenue str. CDC2 chromosome, complete79.2188 %Subject ←→ Query37.5766
NC_017268:747429*Treponema pallidum subsp. pallidum str. Chicago chromosome,93.8511 %Subject ←→ Query40.7332
NC_021508:745388*Treponema pallidum subsp. pallidum SS14, complete genome94.8039 %Subject ←→ Query41.5767
NC_016844:748117*Treponema pallidum subsp. pallidum DAL-1 chromosome, complete97.2947 %Subject ←→ Query41.8991
NC_016842:775368*Treponema pallidum subsp. pertenue str. SamoaD chromosome, complete78.5754 %Subject ←→ Query42.0015
NC_016843:747950*Treponema pallidum subsp. pertenue str. Gauthier chromosome,96.5227 %Subject ←→ Query42.0177