Pre_GI: OUP Neighbours

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Query: NC_016842:775368 Treponema pallidum subsp. pertenue str. SamoaD chromosome, complete

D: 42.0015

Host Lineage: Treponema pallidum; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was isolated in Western Samoa in 1953. Treponema pallidum subsp. pertenue causes the chronic and disfiguring illness called yaws. The disease starts as a skin infection causing persistent ulcers and progresses to form tumor-like masses. This disease tends to infect children and is common in rural areas in Africa, Southeast Asia and equatorial South America.

Number of Neighbours: 82




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_015714:1*Treponema paraluiscuniculi Cuniculi A chromosome, complete genome78.3333 %Subject ←→ Query32.2258
NC_015714:238891*Treponema paraluiscuniculi Cuniculi A chromosome, complete genome80.2145 %Subject ←→ Query33.229
NC_016842:1*Treponema pallidum subsp. pertenue str. SamoaD chromosome, complete79.8805 %Subject ←→ Query33.6701
NC_010741:949732*Treponema pallidum subsp. pallidum SS14, complete genome81.2347 %Subject ←→ Query33.6941
NC_016842:748419*Treponema pallidum subsp. pertenue str. SamoaD chromosome, complete78.9062 %Subject ←→ Query33.7123
NC_016843:1*Treponema pallidum subsp. pertenue str. Gauthier chromosome,79.9112 %Subject ←→ Query33.7521
NC_000919:107373*Treponema pallidum subsp. pallidum str. Nichols, complete genome80.9804 %Subject ←→ Query33.8461
NC_010741:107370*Treponema pallidum subsp. pallidum SS14, complete genome80.9804 %Subject ←→ Query33.9494
NC_017268:1*Treponema pallidum subsp. pallidum str. Chicago chromosome,79.8805 %Subject ←→ Query34.0577
NC_021508:107384*Treponema pallidum subsp. pallidum SS14, complete genome80.9865 %Subject ←→ Query34.2656
NC_015714:943178*Treponema paraluiscuniculi Cuniculi A chromosome, complete genome78.03 %Subject ←→ Query34.2929
NC_010741:775000*Treponema pallidum subsp. pallidum SS14, complete genome98.1403 %Subject ←→ Query34.3142
NC_017268:949543*Treponema pallidum subsp. pallidum str. Chicago chromosome,81.5748 %Subject ←→ Query34.6634
NC_021508:949769*Treponema pallidum subsp. pallidum SS14, complete genome81.2316 %Subject ←→ Query34.8452
NC_016844:107382*Treponema pallidum subsp. pallidum DAL-1 chromosome, complete80.9835 %Subject ←→ Query34.9891
NC_017268:107387*Treponema pallidum subsp. pallidum str. Chicago chromosome,80.9835 %Subject ←→ Query35.0316
NC_000919:948287*Treponema pallidum subsp. pallidum str. Nichols, complete genome81.2776 %Subject ←→ Query35.037
NC_016842:949899*Treponema pallidum subsp. pertenue str. SamoaD chromosome, complete78.4896 %Subject ←→ Query35.1975
NC_000919:746875Treponema pallidum subsp. pallidum str. Nichols, complete genome78.462 %Subject ←→ Query35.1998
NC_016843:775371*Treponema pallidum subsp. pertenue str. Gauthier chromosome,92.3131 %Subject ←→ Query35.3265
NC_016848:775822*Treponema pallidum subsp. pertenue str. CDC2 chromosome, complete97.8217 %Subject ←→ Query35.369
NC_015714:768500*Treponema paraluiscuniculi Cuniculi A chromosome, complete genome92.1752 %Subject ←→ Query35.483
NC_016844:950231*Treponema pallidum subsp. pallidum DAL-1 chromosome, complete81.5748 %Subject ←→ Query35.5106
NC_017268:775000*Treponema pallidum subsp. pallidum str. Chicago chromosome,97.598 %Subject ←→ Query35.5446
NC_016843:950000*Treponema pallidum subsp. pertenue str. Gauthier chromosome,78.4436 %Subject ←→ Query35.6176
NC_016844:775334*Treponema pallidum subsp. pallidum DAL-1 chromosome, complete92.2518 %Subject ←→ Query35.8628
NC_021508:775264*Treponema pallidum subsp. pallidum SS14, complete genome97.7788 %Subject ←→ Query36.5637
NC_015714:741044*Treponema paraluiscuniculi Cuniculi A chromosome, complete genome79.1636 %Subject ←→ Query36.7394
NC_016848:950353*Treponema pallidum subsp. pertenue str. CDC2 chromosome, complete78.4957 %Subject ←→ Query36.963
NC_000919:773784Treponema pallidum subsp. pallidum str. Nichols, complete genome97.7175 %Subject ←→ Query36.964
NC_021508:12543*Treponema pallidum subsp. pallidum SS14, complete genome79.5711 %Subject ←→ Query36.9954
NC_016844:12545*Treponema pallidum subsp. pallidum DAL-1 chromosome, complete79.5925 %Subject ←→ Query37.0075
NC_010741:745357Treponema pallidum subsp. pallidum SS14, complete genome79.5987 %Subject ←→ Query37.2477
NC_000919:12545*Treponema pallidum subsp. pallidum str. Nichols, complete genome79.5803 %Subject ←→ Query37.2678
NC_010741:12542*Treponema pallidum subsp. pallidum SS14, complete genome79.5864 %Subject ←→ Query37.3966
NC_016848:12548*Treponema pallidum subsp. pertenue str. CDC2 chromosome, complete79.5037 %Subject ←→ Query37.5766
NC_017268:747429*Treponema pallidum subsp. pallidum str. Chicago chromosome,79.0319 %Subject ←→ Query40.7332
NC_021508:745388*Treponema pallidum subsp. pallidum SS14, complete genome79.5864 %Subject ←→ Query41.5767
NC_016848:748873Treponema pallidum subsp. pertenue str. CDC2 chromosome, complete78.5754 %Subject ←→ Query41.8665
NC_016844:748117*Treponema pallidum subsp. pallidum DAL-1 chromosome, complete79.0931 %Subject ←→ Query41.8991
NC_016843:747950*Treponema pallidum subsp. pertenue str. Gauthier chromosome,78.3946 %Subject ←→ Query42.0177