Pre_GI: OUP Neighbours

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Query: NC_016842:546661 Treponema pallidum subsp. pertenue str. SamoaD chromosome, complete

D: 33.9418

Host Lineage: Treponema pallidum; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was isolated in Western Samoa in 1953. Treponema pallidum subsp. pertenue causes the chronic and disfiguring illness called yaws. The disease starts as a skin infection causing persistent ulcers and progresses to form tumor-like masses. This disease tends to infect children and is common in rural areas in Africa, Southeast Asia and equatorial South America.

Number of Neighbours: 26




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_017268:546376*Treponema pallidum subsp. pallidum str. Chicago chromosome,92.6103 %Subject ←→ Query33.1192
NC_000919:107373*Treponema pallidum subsp. pallidum str. Nichols, complete genome76.7371 %Subject ←→ Query33.8461
NC_016843:547149Treponema pallidum subsp. pertenue str. Gauthier chromosome,99.8223 %Subject ←→ Query33.9027
NC_010741:107370*Treponema pallidum subsp. pallidum SS14, complete genome76.7371 %Subject ←→ Query33.9494
NC_016844:547069Treponema pallidum subsp. pallidum DAL-1 chromosome, complete99.182 %Subject ←→ Query33.9677
NC_021508:107384*Treponema pallidum subsp. pallidum SS14, complete genome76.6881 %Subject ←→ Query34.2656
NC_016844:107382*Treponema pallidum subsp. pallidum DAL-1 chromosome, complete76.6851 %Subject ←→ Query34.9891
NC_017268:107387*Treponema pallidum subsp. pallidum str. Chicago chromosome,76.6851 %Subject ←→ Query35.0316
NC_021508:546592Treponema pallidum subsp. pallidum SS14, complete genome99.0686 %Subject ←→ Query35.062
NC_016848:547115Treponema pallidum subsp. pertenue str. CDC2 chromosome, complete99.7794 %Subject ←→ Query35.7308
NC_010741:546573Treponema pallidum subsp. pallidum SS14, complete genome99.0533 %Subject ←→ Query41.5824
NC_000919:545141Treponema pallidum subsp. pallidum str. Nichols, complete genome99.1605 %Subject ←→ Query41.6809
NC_015714:542679Treponema paraluiscuniculi Cuniculi A chromosome, complete genome96.7555 %Subject ←→ Query42.5222