Pre_GI: OUP Neighbours

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Query: NC_016798:586689 Chlamydia trachomatis A2497, complete genome

D: 24.389

Host Lineage: Chlamydia trachomatis; Chlamydia; Chlamydiaceae; Chlamydiales; Chlamydiae; Bacteria

General Information: Chlamydia trachomatis A2497 was isolated from a 2.5-year-old with intense active trachoma in Tanzania. This species causes infection that leads to blindness and sexually transmitted diseases in humans. There are 15 serovariants that preferentially cause disease in either the eye or the urogenital tract. The trachoma (infection of the mucous membrane of the eyelids) biovars are noninvasive and can cause blinding trachoma (variants A, B, Ba, and C), or sexually transmitted diseases (variants, D, E, F, G, H, I, J, and K). The lymphogranuloma venereum biovars (variants L1, L2, and L3) can cross the epithelial cells of mucous membranes and then travel through the lymphatic system where they multiply within mononuclear phagocytes found within the lymph nodes. Bacteria belonging to the Chlamydiales group are obligate intracellular parasites of eukaryotic cells. They are found within vertebrates, invertebrate cells, and amoebae hosts. Chlamydiae are one of the commonest causes of sexually transmitted diseases (STDs) and if left untreated may cause infertility in women. They are transmitted by direct contact or aerosols, and can cause various diseases, while also being able to coexist with the host in an apparently asymptomatic state.

Number of Neighbours: 182

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_019814:320260*Candidatus Kinetoplastibacterium blastocrithidii (ex Strigomonas75.5515 %Subject ←→ Query16.923
NC_017292:716050Chlamydophila psittaci 02DC15 chromosome, complete genome78.9246 %Subject ←→ Query20.3763
NC_019814:678404*Candidatus Kinetoplastibacterium blastocrithidii (ex Strigomonas75.7169 %Subject ←→ Query21.1667
NC_017290:716092Chlamydophila psittaci 08DC60 chromosome, complete genome78.6979 %Subject ←→ Query21.2589
NC_017289:716085Chlamydophila psittaci 01DC11 chromosome, complete genome78.6795 %Subject ←→ Query21.5649
NC_020248:708024Chlamydophila psittaci Mat116, complete genome78.655 %Subject ←→ Query21.6531
NC_017287:710104Chlamydophila psittaci 6BC chromosome, complete genome78.1403 %Subject ←→ Query21.8446
NC_015470:1096232*Chlamydophila psittaci 6BC chromosome, complete genome81.0233 %Subject ←→ Query21.9084
NC_017291:829577*Chlamydophila psittaci C19/98 chromosome, complete genome80.098 %Subject ←→ Query21.9784
NC_017292:834749*Chlamydophila psittaci 02DC15 chromosome, complete genome80.2574 %Subject ←→ Query22.2519
NC_017285:671546Chlamydophila pneumoniae LPCoLN chromosome, complete genome81.3143 %Subject ←→ Query22.2742
NC_017289:834781*Chlamydophila psittaci 01DC11 chromosome, complete genome80.4473 %Subject ←→ Query22.2915
NC_017285:913000*Chlamydophila pneumoniae LPCoLN chromosome, complete genome80.9436 %Subject ←→ Query22.3654
NC_017430:350668*Chlamydia trachomatis G/11222 chromosome, complete genome85.8241 %Subject ←→ Query22.7657
NC_017291:713265Chlamydophila psittaci C19/98 chromosome, complete genome78.7776 %Subject ←→ Query22.8093
NC_020248:268000Chlamydophila psittaci Mat116, complete genome82.068 %Subject ←→ Query22.874
NC_017289:269301*Chlamydophila psittaci 01DC11 chromosome, complete genome81.7188 %Subject ←→ Query22.8995
NC_017291:269297*Chlamydophila psittaci C19/98 chromosome, complete genome81.7616 %Subject ←→ Query22.9117
NC_017290:269300*Chlamydophila psittaci 08DC60 chromosome, complete genome81.7126 %Subject ←→ Query22.933
NC_017292:269297*Chlamydophila psittaci 02DC15 chromosome, complete genome81.7524 %Subject ←→ Query22.9363
NC_012686:356865*Chlamydia trachomatis B/Jali20/OT chromosome, complete genome85.7138 %Subject ←→ Query22.9481
NC_016620:341699Bacteriovorax marinus SJ, complete genome77.9626 %Subject ←→ Query23.0191
NC_019907:287339*Liberibacter crescens BT-1 chromosome, complete genome79.136 %Subject ←→ Query23.1609
NC_017440:355205*Chlamydia trachomatis G/11074 chromosome, complete genome85.7476 %Subject ←→ Query23.2794
NC_017432:355205*Chlamydia trachomatis G/9301 chromosome, complete genome85.7476 %Subject ←→ Query23.2794
NC_017430:49052Chlamydia trachomatis G/11222 chromosome, complete genome82.1691 %Subject ←→ Query23.3341
NC_017439:45953Chlamydia trachomatis E/150 chromosome, complete genome81.6299 %Subject ←→ Query23.3524
NC_017289:1096765*Chlamydophila psittaci 01DC11 chromosome, complete genome80.9436 %Subject ←→ Query23.3585
NC_005956:1139342*Bartonella henselae str. Houston-1, complete genome75.288 %Subject ←→ Query23.553
NC_017290:1096599*Chlamydophila psittaci 08DC60 chromosome, complete genome81.2623 %Subject ←→ Query23.5768
NC_010287:957862*Chlamydia trachomatis 434/Bu, complete genome80.5055 %Subject ←→ Query23.6199
NC_012687:641808*Chlamydia trachomatis B/TZ1A828/OT chromosome, complete genome81.1305 %Subject ←→ Query23.6989
NC_017439:451535*Chlamydia trachomatis E/150 chromosome, complete genome81.204 %Subject ←→ Query23.7111
NC_019907:920797*Liberibacter crescens BT-1 chromosome, complete genome81.2929 %Subject ←→ Query23.7676
NC_017431:451551*Chlamydia trachomatis E/11023 chromosome, complete genome81.204 %Subject ←→ Query23.9178
NC_017287:269205*Chlamydophila psittaci 6BC chromosome, complete genome82.0312 %Subject ←→ Query24.068
NC_017437:641843*Chlamydia trachomatis A2497 chromosome, complete genome81.1091 %Subject ←→ Query24.0698
NC_016798:641842*Chlamydia trachomatis A2497, complete genome81.1305 %Subject ←→ Query24.0698
NC_017437:360949*Chlamydia trachomatis A2497 chromosome, complete genome83.7929 %Subject ←→ Query24.0844
NC_017436:639268*Chlamydia trachomatis D-LC chromosome, complete genome80.9069 %Subject ←→ Query24.1184
NC_017292:1096730*Chlamydophila psittaci 02DC15 chromosome, complete genome80.8824 %Subject ←→ Query24.147
NC_016798:360945*Chlamydia trachomatis A2497, complete genome83.8051 %Subject ←→ Query24.159
NC_012687:586657*Chlamydia trachomatis B/TZ1A828/OT chromosome, complete genome99.5098 %Subject ←→ Query24.1656
NC_010280:957890*Chlamydia trachomatis L2b/UCH-1/proctitis, complete genome80.5423 %Subject ←→ Query24.1792
NC_000117:639268*Chlamydia trachomatis D/UW-3/CX, complete genome80.9069 %Subject ←→ Query24.2461
NC_019907:467377*Liberibacter crescens BT-1 chromosome, complete genome80.1042 %Subject ←→ Query24.2863
NC_012686:586714*Chlamydia trachomatis B/Jali20/OT chromosome, complete genome98.9553 %Subject ←→ Query24.2972
NC_012686:641870*Chlamydia trachomatis B/Jali20/OT chromosome, complete genome81.1397 %Subject ←→ Query24.3069
NC_017440:583392*Chlamydia trachomatis G/11074 chromosome, complete genome97.7696 %Subject ←→ Query24.39
NC_017437:586692*Chlamydia trachomatis A2497 chromosome, complete genome100 %Subject ←→ Query24.4163
NC_007429:585774*Chlamydia trachomatis A/HAR-13, complete genome96.8444 %Subject ←→ Query24.5136
NC_017291:1093946*Chlamydophila psittaci C19/98 chromosome, complete genome80.9436 %Subject ←→ Query24.62
NC_017429:45965Chlamydia trachomatis G/9768 chromosome, complete genome81.9363 %Subject ←→ Query24.7325
NC_017440:45965Chlamydia trachomatis G/11074 chromosome, complete genome81.973 %Subject ←→ Query24.7325
NC_017432:45965Chlamydia trachomatis G/9301 chromosome, complete genome81.9301 %Subject ←→ Query24.7325
NC_017432:583328*Chlamydia trachomatis G/9301 chromosome, complete genome97.7727 %Subject ←→ Query24.7963
NC_017287:1096144*Chlamydophila psittaci 6BC chromosome, complete genome80.9559 %Subject ←→ Query24.8231
NC_017429:583327*Chlamydia trachomatis G/9768 chromosome, complete genome97.7819 %Subject ←→ Query24.845
NC_017429:362482Chlamydia trachomatis G/9768 chromosome, complete genome81.2194 %Subject ←→ Query24.9696
NC_012686:49643Chlamydia trachomatis B/Jali20/OT chromosome, complete genome82.1293 %Subject ←→ Query25.0821
NC_017431:583529*Chlamydia trachomatis E/11023 chromosome, complete genome96.9363 %Subject ←→ Query25.1179
NC_017432:639531*Chlamydia trachomatis G/9301 chromosome, complete genome81.0846 %Subject ←→ Query25.1398
NC_017429:639530*Chlamydia trachomatis G/9768 chromosome, complete genome81.0784 %Subject ←→ Query25.1398
NC_017437:49643Chlamydia trachomatis A2497 chromosome, complete genome82.1385 %Subject ←→ Query25.1459
NC_017439:639694*Chlamydia trachomatis E/150 chromosome, complete genome80.7047 %Subject ←→ Query25.1459
NC_012687:49640Chlamydia trachomatis B/TZ1A828/OT chromosome, complete genome82.0925 %Subject ←→ Query25.1459
NC_016798:49643Chlamydia trachomatis A2497, complete genome81.973 %Subject ←→ Query25.1459
NC_017439:583513*Chlamydia trachomatis E/150 chromosome, complete genome96.9393 %Subject ←→ Query25.2614
NC_017431:639710*Chlamydia trachomatis E/11023 chromosome, complete genome80.7476 %Subject ←→ Query25.456
NC_020301:669000*Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genome75.4381 %Subject ←→ Query25.5862
NC_020301:1342924*Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genome76.1305 %Subject ←→ Query25.5958
NC_017440:639595*Chlamydia trachomatis G/11074 chromosome, complete genome81.106 %Subject ←→ Query25.5958
NC_007429:49647Chlamydia trachomatis A/HAR-13, complete genome81.9516 %Subject ←→ Query25.608
NC_017430:582000*Chlamydia trachomatis G/11222 chromosome, complete genome96.3726 %Subject ←→ Query25.8512
NC_020248:1087940*Chlamydophila psittaci Mat116, complete genome80.9099 %Subject ←→ Query26.0899
NC_015408:561987Chlamydophila pecorum E58 chromosome, complete genome79.2892 %Subject ←→ Query26.3011
NC_017436:581986*Chlamydia trachomatis D-LC chromosome, complete genome97.0956 %Subject ←→ Query26.5503
NC_017434:581988*Chlamydia trachomatis D-EC chromosome, complete genome97.0956 %Subject ←→ Query26.5503
NC_015744:900000*Chlamydia trachomatis L2c chromosome, complete genome96.3174 %Subject ←→ Query27.6386
NC_012846:2004711*Bartonella grahamii as4aup, complete genome76.6759 %Subject ←→ Query27.95
NC_015276:2804874*Marinomonas mediterranea MMB-1 chromosome, complete genome76.1826 %Subject ←→ Query29.8547
NC_010161:1598000*Bartonella tribocorum CIP 105476, complete genome76.0141 %Subject ←→ Query30.262
NC_013009:225722*Neorickettsia risticii str. Illinois, complete genome81.25 %Subject ←→ Query30.3647
NC_014644:1532500*Gardnerella vaginalis ATCC 14019 chromosome, complete genome76.7586 %Subject ←→ Query30.4718
NC_005956:1648000*Bartonella henselae str. Houston-1, complete genome78.9001 %Subject ←→ Query31.2454
NC_007355:2838952*Methanosarcina barkeri str. fusaro chromosome 1, complete sequence75.3156 %Subject ←→ Query31.5471
NC_006138:1245944*Desulfotalea psychrophila LSv54, complete genome76.8566 %Subject ←→ Query32.3163
NC_010161:2155500*Bartonella tribocorum CIP 105476, complete genome75.8885 %Subject ←→ Query32.5841
NC_018697:2055725*Cycloclasticus sp. P1 chromosome, complete genome77.4387 %Subject ←→ Query33.7578
NC_020300:1241968*Bartonella australis Aust/NH1, complete genome76.6881 %Subject Query35.4329
NC_020300:1344453*Bartonella australis Aust/NH1, complete genome75.2757 %Subject Query39.2578