Pre_GI: OUP Neighbours

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Query: NC_015761:4098481 Salmonella bongori NCTC 12419, complete genome

D: 38.0704

Host Lineage: Salmonella bongori; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella bongori is the second species of Salmonella after Salmonella enterica and is considered a distant outgroup. This species is reptile-specific, is rarely found in human infections and it lacks SPI-2. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 206




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_010658:3622610Shigella boydii CDC 3083-94, complete genome75.2512 %Subject Query27.4714
NC_012947:2228235Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, complete75.2083 %Subject Query27.97
NC_010067:2881448Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete75.3493 %Subject ←→ Query29.2042
NC_012967:1593101Escherichia coli B str. REL606 chromosome, complete genome75.2543 %Subject ←→ Query29.2262
NC_009800:2049346Escherichia coli HS, complete genome76.2868 %Subject ←→ Query29.8169
NC_012912:2426520Dickeya zeae Ech1591, complete genome76.2684 %Subject ←→ Query29.9854
NC_010468:2345781Escherichia coli ATCC 8739, complete genome77.2335 %Subject ←→ Query30.5435
NC_009708:915814Yersinia pseudotuberculosis IP 31758 chromosome, complete genome75.4749 %Subject ←→ Query30.608
NC_010473:1661000Escherichia coli str. K-12 substr. DH10B, complete genome77.3039 %Subject ←→ Query30.7423
NC_000913:1570431Escherichia coli K12, complete genome77.6042 %Subject ←→ Query31.0489
AC_000091:1574000Escherichia coli W3110 DNA, complete genome77.5643 %Subject ←→ Query31.0826
NC_012967:1546000Escherichia coli B str. REL606 chromosome, complete genome75.0337 %Subject ←→ Query31.1581
NC_012967:3696877Escherichia coli B str. REL606 chromosome, complete genome75.3033 %Subject ←→ Query31.1862
NC_012759:1462490Escherichia coli BW2952 chromosome, complete genome77.6042 %Subject ←→ Query31.3337
CP002185:1681327Escherichia coli W, complete genome77.3101 %Subject ←→ Query31.3882
NC_017046:3027161Salmonella enterica subsp. enterica serovar Typhimurium str. 79875.7843 %Subject ←→ Query31.4425
NC_011745:3245000Escherichia coli ED1a chromosome, complete genome75.625 %Subject ←→ Query31.481
NC_011741:1579375Escherichia coli IAI1 chromosome, complete genome77.2273 %Subject ←→ Query31.5014
CU928160:1579375Escherichia coli IAI1 chromosome, complete genome77.2273 %Subject ←→ Query31.5014
NC_016902:2395578Escherichia coli KO11FL chromosome, complete genome76.3756 %Subject ←→ Query31.6317
NC_016856:4482845Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S88.7929 %Subject ←→ Query31.7364
NC_009800:1589000Escherichia coli HS, complete genome77.3958 %Subject ←→ Query31.8533
NC_011094:4361238Salmonella enterica subsp. enterica serovar Schwarzengrund str82.8707 %Subject ←→ Query31.9613
CP002516:2395578Escherichia coli KO11, complete genome76.3756 %Subject ←→ Query32.4457
NC_002655:1966464Escherichia coli O157:H7 EDL933, complete genome75.8793 %Subject ←→ Query32.659
NC_015761:2726000Salmonella bongori NCTC 12419, complete genome75.4994 %Subject ←→ Query32.7025
NC_009801:2159123Escherichia coli E24377A, complete genome75.9651 %Subject ←→ Query32.7456
NC_012967:531000Escherichia coli B str. REL606 chromosome, complete genome75.1532 %Subject ←→ Query33.0316
NC_009801:4073968Escherichia coli E24377A, complete genome75.9743 %Subject ←→ Query33.1357
NC_011750:1978801Escherichia coli IAI39 chromosome, complete genome75.2237 %Subject ←→ Query33.1799
NC_016863:4431831Salmonella enterica subsp. enterica serovar Typhimurium str. UK-189.0319 %Subject ←→ Query33.2989
CU928145:4131924Escherichia coli 55989 chromosome, complete genome75.9988 %Subject ←→ Query33.3341
NC_011748:4131924Escherichia coli 55989, complete genome75.9988 %Subject ←→ Query33.3341
NC_003197:3005842*Salmonella typhimurium LT2, complete genome75.383 %Subject ←→ Query34.6485
CP002185:3964500Escherichia coli W, complete genome75.864 %Subject ←→ Query35.0255
NC_016810:3028421Salmonella enterica subsp. enterica serovar Typhimurium str75.3922 %Subject ←→ Query35.0334
NC_016857:3028421*Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/7475.3922 %Subject ←→ Query35.0334
NC_012125:4400636Salmonella enterica subsp. enterica serovar Paratyphi C strain89.3382 %Subject ←→ Query35.0909
NC_011274:2881306Salmonella enterica subsp. enterica serovar Gallinarum str. 287/9175.6618 %Subject ←→ Query35.1281
NC_011149:2912219Salmonella enterica subsp. enterica serovar Agona str. SL483,75.1226 %Subject ←→ Query35.1509
NC_011080:2982346Salmonella enterica subsp. enterica serovar Newport str. SL254,75.6556 %Subject ←→ Query35.1591
NC_011205:4486142Salmonella enterica subsp. enterica serovar Dublin str. CT_0202185389.2279 %Subject ←→ Query35.3782
NC_011094:380428Salmonella enterica subsp. enterica serovar Schwarzengrund str75.2451 %Subject ←→ Query35.3908
NC_011415:4006500Escherichia coli SE11 chromosome, complete genome75.9773 %Subject ←→ Query35.4073
NC_016514:2713834*Enterobacter cloacae EcWSU1 chromosome, complete genome75.8364 %Subject ←→ Query35.4932
NC_016863:2974333*Salmonella enterica subsp. enterica serovar Typhimurium str. UK-175.4412 %Subject ←→ Query35.5423
NC_012947:3231893*Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, complete75.2359 %Subject ←→ Query35.6921
NC_016831:2867766Salmonella enterica subsp. enterica serovar Gallinarum/pullorum75.3554 %Subject ←→ Query35.8486
NC_016856:3026426*Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S75.527 %Subject ←→ Query35.8518
NC_016831:4286000Salmonella enterica subsp. enterica serovar Gallinarum/pullorum89.1789 %Subject ←→ Query35.8713
NC_006905:4405301Salmonella enterica subsp. enterica serovar Choleraesuis str83.9062 %Subject ←→ Query35.9057
NC_008563:1505405Escherichia coli APEC O1, complete genome79.0165 %Subject ←→ Query35.9085
NC_016860:4575772Salmonella enterica subsp. enterica serovar Typhimurium str88.9399 %Subject ←→ Query35.944
NC_011294:2890500Salmonella enterica subsp. enterica serovar Enteritidis str75.7138 %Subject ←→ Query35.9731
NC_013421:2613137*Pectobacterium wasabiae WPP163, complete genome76.2071 %Subject ←→ Query36.1152
NC_017046:4490500Salmonella enterica subsp. enterica serovar Typhimurium str. 79888.9706 %Subject ←→ Query36.1538
NC_010102:931055Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,75.6648 %Subject ←→ Query36.259
NC_011149:4390315Salmonella enterica subsp. enterica serovar Agona str. SL483,89.7059 %Subject ←→ Query36.2711
NC_003198:1867456Salmonella enterica subsp. enterica serovar Typhi str. CT18,75.8211 %Subject ←→ Query36.3276
NC_015761:299386*Salmonella bongori NCTC 12419, complete genome76.8873 %Subject ←→ Query36.3296
NC_010067:2488141Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete77.8493 %Subject ←→ Query36.336
NC_006905:2960260Salmonella enterica subsp. enterica serovar Choleraesuis str76.0907 %Subject ←→ Query36.3752
NC_016857:4491976Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/7488.9982 %Subject ←→ Query36.3975
NC_003198:4315807Salmonella enterica subsp. enterica serovar Typhi str. CT18,89.3505 %Subject ←→ Query36.5568
NC_004631:4300457Salmonella enterica subsp. enterica serovar Typhi Ty2, complete89.3413 %Subject ←→ Query36.6055
NC_016810:4491975Salmonella enterica subsp. enterica serovar Typhimurium str88.9982 %Subject ←→ Query36.7578
NC_011205:3050235Salmonella enterica subsp. enterica serovar Dublin str. CT_0202185375.5484 %Subject ←→ Query36.8492
NC_011601:2854178*Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome75.0551 %Subject ←→ Query37.039
NC_011147:4221000Salmonella enterica subsp. enterica serovar Paratyphi A str86.7984 %Subject ←→ Query37.041
NC_016860:3029272*Salmonella enterica subsp. enterica serovar Typhimurium str75.3891 %Subject ←→ Query37.0939
NC_012125:2143246*Salmonella enterica subsp. enterica serovar Paratyphi C strain75.2206 %Subject ←→ Query37.0952
NC_003197:4470683Salmonella typhimurium LT2, complete genome88.9338 %Subject ←→ Query37.2395
NC_011080:4461851Salmonella enterica subsp. enterica serovar Newport str. SL254,89.5558 %Subject ←→ Query37.425
NC_010102:4396500Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,89.2739 %Subject ←→ Query37.4536
NC_011083:4466634Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,89.6661 %Subject ←→ Query37.5078
NC_011080:1709612Salmonella enterica subsp. enterica serovar Newport str. SL254,75.4718 %Subject ←→ Query37.5912
NC_011094:1683979*Salmonella enterica subsp. enterica serovar Schwarzengrund str75.0674 %Subject ←→ Query37.7731
NC_011205:1633353*Salmonella enterica subsp. enterica serovar Dublin str. CT_0202185375.046 %Subject ←→ Query37.9996
NC_006905:1726416Salmonella enterica subsp. enterica serovar Choleraesuis str75.576 %Subject ←→ Query38.2121
NC_017328:3625000Shigella flexneri 2002017 chromosome, complete genome75.0551 %Subject ←→ Query38.2987
NC_006511:4225455Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC86.875 %Subject ←→ Query38.7268
NC_012962:3499900Photorhabdus asymbiotica, complete genome75.8854 %Subject ←→ Query38.7985
NC_011083:2542876Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,75.1409 %Subject ←→ Query38.8327
NC_011294:4327904Salmonella enterica subsp. enterica serovar Enteritidis str89.1789 %Subject ←→ Query38.9018
NC_006905:1342474Salmonella enterica subsp. enterica serovar Choleraesuis str75.818 %Subject ←→ Query39.1912
NC_016831:1468691Salmonella enterica subsp. enterica serovar Gallinarum/pullorum75.386 %Subject ←→ Query39.4417
NC_011274:4305812Salmonella enterica subsp. enterica serovar Gallinarum str. 287/9189.4547 %Subject ←→ Query39.4623
NC_016818:546805Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, complete75.3217 %Subject ←→ Query39.7767
NC_011094:2913500Salmonella enterica subsp. enterica serovar Schwarzengrund str75.7721 %Subject ←→ Query39.8297
NC_011750:4490573Escherichia coli IAI39 chromosome, complete genome76.0539 %Subject ←→ Query39.857
NC_011751:4373961Escherichia coli UMN026 chromosome, complete genome75.7537 %Subject ←→ Query40.8754
NC_002655:4747926Escherichia coli O157:H7 EDL933, complete genome75.5974 %Subject ←→ Query41.0615
NC_002695:4678945Escherichia coli O157:H7 str. Sakai, complete genome75.6373 %Subject ←→ Query41.3618
NC_010498:4166903Escherichia coli SMS-3-5, complete genome75.818 %Subject ←→ Query41.3716
NC_011750:3584000Escherichia coli IAI39 chromosome, complete genome75.9161 %Subject ←→ Query41.4186
NC_016832:4288980Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,88.6673 %Subject ←→ Query41.5498
NC_011353:4782040Escherichia coli O157:H7 str. EC4115 chromosome, complete genome75.6801 %Subject ←→ Query41.8596
NC_010067:3310336Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete84.8468 %Subject ←→ Query42.4515
NC_013008:4738083Escherichia coli O157:H7 str. TW14359 chromosome, complete genome75.6801 %Subject ←→ Query42.5196
NC_013353:1305712Escherichia coli O103:H2 str. 12009, complete genome75.6832 %Subject ←→ Query42.7374
AP010958:1305712Escherichia coli O103:H2 str. 12009 DNA, complete genome75.6832 %Subject ←→ Query42.7374
NC_013421:4714478*Pectobacterium wasabiae WPP163, complete genome77.6379 %Subject ←→ Query44.5469
NC_011751:3530954Escherichia coli UMN026 chromosome, complete genome76.008 %Subject ←→ Query45.2956