Pre_GI: OUP Neighbours

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Query: NC_015571:801715 Porphyromonas gingivalis TDC60, complete genome

D: 33.0257

Host Lineage: Porphyromonas gingivalis; Porphyromonas; Porphyromonadaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: This organism is associated with severe and chronic periodontal (tissues surrounding and supporting the tooth) diseases. Progression of the disease is caused by colonization by this organism in an anaerobic environment in host tissues and severe progression results in loss of the tissues supporting the tooth and eventually loss of the tooth itself. The black pigmentation characteristic of this bacterium comes from iron acquisition that does not use the typical siderophore system of other bacteria but accumulates hemin. Peptides appear to be the predominant carbon and energy source of this organism, perhaps in keeping with its ability to destroy host tissue. Oxygen tolerance systems play a part in establishment of the organism in the oral cavity, including a superoxide dismutase. Pathogenic factors include extracellular adhesins that mediate interactions with other bacteria as well as the extracellular matrix, and a host of degradative enzymes that are responsible for tissue degradation and spread of the organism including the gingipains, which are trypsin-like cysteine proteases.

Number of Neighbours: 30




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_006347:451216*Bacteroides fragilis YCH46, complete genome75.3186 %Subject ←→ Query34.4267
NC_004663:2437760Bacteroides thetaiotaomicron VPI-5482, complete genome76.7157 %Subject ←→ Query37.7976
NC_004663:107019*Bacteroides thetaiotaomicron VPI-5482, complete genome76.5931 %Subject ←→ Query35.974
NC_008942:875060Methanocorpusculum labreanum Z, complete genome75.9651 %Subject ←→ Query39.1791
NC_008942:1768588Methanocorpusculum labreanum Z, complete genome75.5576 %Subject ←→ Query33.5403
NC_014507:611625*Methanoplanus petrolearius DSM 11571 chromosome, complete genome77.3284 %Subject ←→ Query29.1121
NC_014507:374359*Methanoplanus petrolearius DSM 11571 chromosome, complete genome76.3971 %Subject ←→ Query32.0826
NC_014507:245344Methanoplanus petrolearius DSM 11571 chromosome, complete genome75.9712 %Subject ←→ Query32.12
NC_014507:2034000Methanoplanus petrolearius DSM 11571 chromosome, complete genome76.6667 %Subject ←→ Query28.9072
NC_014507:1797583*Methanoplanus petrolearius DSM 11571 chromosome, complete genome75.1961 %Subject ←→ Query28.1736
NC_014507:1558286*Methanoplanus petrolearius DSM 11571 chromosome, complete genome76.5165 %Subject ←→ Query29.0471
NC_014935:1704816Nitratifractor saLSUginis DSM 16511 chromosome, complete genome76.0018 %Subject Query52.884
NC_014935:1389000Nitratifractor saLSUginis DSM 16511 chromosome, complete genome75.0705 %Subject ←→ Query38.7212
NC_015160:585220*Odoribacter splanchnicus DSM 20712 chromosome, complete genome75.6036 %Subject ←→ Query29.0218
NC_015160:3729628Odoribacter splanchnicus DSM 20712 chromosome, complete genome76.2224 %Subject ←→ Query30.3943
NC_010729:1344903*Porphyromonas gingivalis ATCC 33277, complete genome75.9314 %Subject ←→ Query28.6722
NC_015571:168617*Porphyromonas gingivalis TDC60, complete genome77.5551 %Subject ←→ Query35.8726
NC_015571:1207000Porphyromonas gingivalis TDC60, complete genome75.4228 %Subject ←→ Query33.9518
NC_002950:2098454Porphyromonas gingivalis W83, complete genome75.8119 %Subject ←→ Query29.9884
NC_002950:1270132Porphyromonas gingivalis W83, complete genome75.8762 %Subject ←→ Query34.3389
NC_015311:1860666Prevotella denticola F0289 chromosome, complete genome75.2972 %Subject ←→ Query41.2926
NC_014364:1990000Spirochaeta smaragdinae DSM 11293 chromosome, complete genome79.9724 %Subject ←→ Query34.5057
NC_014364:894373*Spirochaeta smaragdinae DSM 11293 chromosome, complete genome75.2053 %Subject ←→ Query38.0711
NC_014364:4488875Spirochaeta smaragdinae DSM 11293 chromosome, complete genome82.5306 %Subject ←→ Query40.795
NC_014364:3001597Spirochaeta smaragdinae DSM 11293 chromosome, complete genome77.7849 %Subject Query43.5079
NC_014364:2751662*Spirochaeta smaragdinae DSM 11293 chromosome, complete genome78.8051 %Subject ←→ Query36.1819
NC_014364:2717865Spirochaeta smaragdinae DSM 11293 chromosome, complete genome81.1918 %Subject ←→ Query38.439
NC_014364:2562281*Spirochaeta smaragdinae DSM 11293 chromosome, complete genome75.7782 %Subject ←→ Query35.4937
NC_002967:2656000*Treponema denticola ATCC 35405, complete genome76.4154 %Subject ←→ Query32.2167
NC_002967:2507993Treponema denticola ATCC 35405, complete genome75.4013 %Subject ←→ Query27.8636