Pre_GI: OUP Neighbours

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Query: NC_015571:1065775 Porphyromonas gingivalis TDC60, complete genome

D: 30.9847

Host Lineage: Porphyromonas gingivalis; Porphyromonas; Porphyromonadaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: This organism is associated with severe and chronic periodontal (tissues surrounding and supporting the tooth) diseases. Progression of the disease is caused by colonization by this organism in an anaerobic environment in host tissues and severe progression results in loss of the tissues supporting the tooth and eventually loss of the tooth itself. The black pigmentation characteristic of this bacterium comes from iron acquisition that does not use the typical siderophore system of other bacteria but accumulates hemin. Peptides appear to be the predominant carbon and energy source of this organism, perhaps in keeping with its ability to destroy host tissue. Oxygen tolerance systems play a part in establishment of the organism in the oral cavity, including a superoxide dismutase. Pathogenic factors include extracellular adhesins that mediate interactions with other bacteria as well as the extracellular matrix, and a host of degradative enzymes that are responsible for tissue degradation and spread of the organism including the gingipains, which are trypsin-like cysteine proteases.

Number of Neighbours: 47

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_008508:1382036Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1,76.4583 %Subject Query17.8569
NC_008510:1339926Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1,76.8015 %Subject Query17.8979
NC_011296:1039749Thermodesulfovibrio yellowstonii DSM 11347, complete genome75.0643 %Subject Query20.0571
NC_014774:671695Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, complete75.2543 %Subject Query20.4767
NC_009828:1530732*Thermotoga lettingae TMO, complete genome75.7138 %Subject ←→ Query20.9934
NC_010280:769639*Chlamydia trachomatis L2b/UCH-1/proctitis, complete genome75.2604 %Subject ←→ Query23.5165
NC_010287:769600*Chlamydia trachomatis 434/Bu, complete genome75.2972 %Subject ←→ Query23.8874
NC_002689:770326*Thermoplasma volcanium GSS1, complete genome75.4749 %Subject ←→ Query23.9573
NC_015744:769907*Chlamydia trachomatis L2c chromosome, complete genome75.4749 %Subject ←→ Query24.6413
NC_014824:263491Ruminococcus albus 7 plasmid pRUMAL01, complete sequence77.2304 %Subject ←→ Query24.7021
NC_012985:1*Candidatus Liberibacter asiaticus str. psy62, complete genome76.4001 %Subject ←→ Query25.264
NC_012785:638000Kosmotoga olearia TBF 19.5.1, complete genome75.3523 %Subject ←→ Query25.4803
NC_015660:3328595Geobacillus thermoglucosidasius C56-YS93 chromosome, complete75.6219 %Subject ←→ Query28.0701
NC_015160:1117371Odoribacter splanchnicus DSM 20712 chromosome, complete genome75.1164 %Subject ←→ Query28.7816
NC_015160:3556114Odoribacter splanchnicus DSM 20712 chromosome, complete genome75.7751 %Subject ←→ Query28.9062
NC_015660:1918307*Geobacillus thermoglucosidasius C56-YS93 chromosome, complete75.8946 %Subject ←→ Query29.0695
NC_012793:3096095Geobacillus sp. WCH70, complete genome75.098 %Subject ←→ Query29.7031
NC_010729:1014957Porphyromonas gingivalis ATCC 33277, complete genome80.9681 %Subject ←→ Query30.0401
NC_003552:2634828Methanosarcina acetivorans C2A, complete genome75.2757 %Subject ←→ Query30.0578
NC_014371:849198Prevotella melaninogenica ATCC 25845 chromosome chromosome II,76.8413 %Subject ←→ Query30.6747
NC_015160:797780*Odoribacter splanchnicus DSM 20712 chromosome, complete genome75.3707 %Subject ←→ Query30.8261
NC_015160:1055220Odoribacter splanchnicus DSM 20712 chromosome, complete genome76.2868 %Subject ←→ Query31.1607
NC_015571:2002489*Porphyromonas gingivalis TDC60, complete genome80.8578 %Subject ←→ Query31.3475
NC_006347:5027580Bacteroides fragilis YCH46, complete genome76.5564 %Subject ←→ Query32.0586
NC_003552:2674385Methanosarcina acetivorans C2A, complete genome75.3339 %Subject ←→ Query32.3056
NC_015571:411156Porphyromonas gingivalis TDC60, complete genome80.432 %Subject ←→ Query32.6171
NC_015152:2549756*Spirochaeta sp. Buddy chromosome, complete genome76.2745 %Subject ←→ Query32.9075
NC_002950:1511955*Porphyromonas gingivalis W83, complete genome80.6219 %Subject ←→ Query33.0544
NC_014364:3633291Spirochaeta smaragdinae DSM 11293 chromosome, complete genome75.6434 %Subject ←→ Query33.1986
NC_002950:1571383Porphyromonas gingivalis W83, complete genome80.6342 %Subject ←→ Query33.7002
NC_014364:4578408Spirochaeta smaragdinae DSM 11293 chromosome, complete genome77.261 %Subject ←→ Query34.4426
NC_002950:879930*Porphyromonas gingivalis W83, complete genome81.7708 %Subject ←→ Query34.5736
NC_015320:470988Archaeoglobus veneficus SNP6 chromosome, complete genome75.5453 %Subject ←→ Query34.6597
NC_010729:1179008*Porphyromonas gingivalis ATCC 33277, complete genome81.7524 %Subject ←→ Query34.8701
NC_010729:619664*Porphyromonas gingivalis ATCC 33277, complete genome79.5404 %Subject ←→ Query35.2723
NC_012491:743883*Brevibacillus brevis NBRC 100599, complete genome75.6097 %Subject ←→ Query35.5725
NC_015164:29004Bacteroides salanitronis DSM 18170 chromosome, complete genome78.7684 %Subject ←→ Query36.1564
NC_014507:1403000Methanoplanus petrolearius DSM 11571 chromosome, complete genome76.0968 %Subject ←→ Query36.2716
NC_014364:667841Spirochaeta smaragdinae DSM 11293 chromosome, complete genome77.8125 %Subject ←→ Query36.4759
NC_015164:1952500Bacteroides salanitronis DSM 18170 chromosome, complete genome76.489 %Subject ←→ Query37.3063
NC_014364:2246524*Spirochaeta smaragdinae DSM 11293 chromosome, complete genome78.5815 %Subject ←→ Query37.5351
NC_015164:2473496*Bacteroides salanitronis DSM 18170 chromosome, complete genome76.0447 %Subject ←→ Query38.3493
NC_014033:395000*Prevotella ruminicola 23 chromosome, complete genome76.6513 %Subject ←→ Query39.5521
NC_014364:2322269*Spirochaeta smaragdinae DSM 11293 chromosome, complete genome78.992 %Subject ←→ Query39.7692
NC_014364:394899Spirochaeta smaragdinae DSM 11293 chromosome, complete genome77.6593 %Subject Query44.1589
NC_015311:2626850Prevotella denticola F0289 chromosome, complete genome78.1036 %Subject Query45.0299
NC_015311:403281*Prevotella denticola F0289 chromosome, complete genome75.5147 %Subject Query48.0161