Pre_GI: OUP Neighbours

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Query: NC_015224:3191000 Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,

D: 34.0665

Host Lineage: Yersinia enterocolitica; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This species is a food and waterborn pathogen that causes gastroenteritis (inflammation of the mucous membranes of the stomach and intestine) and is able to proliferate at temperatures as low as 4 degrees C.

Number of Neighbours: 21




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_015224:279037Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,76.587 %Subject ←→ Query28.7938
NC_012912:4737703Dickeya zeae Ech1591, complete genome75.7843 %Subject ←→ Query29.5142
NC_015968:204969*Enterobacter asburiae LF7a chromosome, complete genome75.4351 %Subject ←→ Query30.2205
NC_006155:3040769Yersinia pseudotuberculosis IP 32953, complete genome84.1268 %Subject ←→ Query31.1041
NC_006511:3759550Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC76.5778 %Subject ←→ Query31.1345
NC_010634:2960000Yersinia pseudotuberculosis PB1/+, complete genome84.7855 %Subject ←→ Query31.2014
NC_011149:3895921Salmonella enterica subsp. enterica serovar Agona str. SL483,76.7218 %Subject ←→ Query31.5601
NC_004088:1801819Yersinia pestis KIM, complete genome84.6048 %Subject ←→ Query31.8002
NC_004631:3841975Salmonella enterica subsp. enterica serovar Typhi Ty2, complete76.9332 %Subject ←→ Query32.0647
NC_010102:3919999Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,76.7708 %Subject ←→ Query32.0708
NC_003197:3971905Salmonella typhimurium LT2, complete genome76.5104 %Subject ←→ Query32.0829
NC_008149:2411161Yersinia pestis Nepal516, complete genome84.2463 %Subject ←→ Query32.2349
NC_011083:3985618Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,76.4216 %Subject ←→ Query32.4599
NC_003198:3855157Salmonella enterica subsp. enterica serovar Typhi str. CT18,77.2917 %Subject ←→ Query32.5632
NC_010465:1724000Yersinia pseudotuberculosis YPIII, complete genome84.3413 %Subject ←→ Query32.6727
NC_003143:2849377Yersinia pestis CO92, complete genome84.3168 %Subject ←→ Query33.8521
NC_010159:1861465Yersinia pestis Angola, complete genome84.8039 %Subject ←→ Query33.8947
NC_005810:2613456Yersinia pestis biovar Microtus str. 91001, complete genome84.5343 %Subject ←→ Query33.9433
NC_013592:3618248*Dickeya dadantii Ech586, complete genome75.8793 %Subject ←→ Query34.4581
NC_013421:1143500Pectobacterium wasabiae WPP163, complete genome75.0919 %Subject ←→ Query36.4256
NC_011080:3941909Salmonella enterica subsp. enterica serovar Newport str. SL254,76.0631 %Subject ←→ Query39.4334