Pre_GI: OUP Neighbours

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Query: NC_015224:279037 Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,

D: 28.7938

Host Lineage: Yersinia enterocolitica; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This species is a food and waterborn pathogen that causes gastroenteritis (inflammation of the mucous membranes of the stomach and intestine) and is able to proliferate at temperatures as low as 4 degrees C.

Number of Neighbours: 44




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_004347:4211241*Shewanella oneidensis MR-1, complete genome75.3646 %Subject ←→ Query26.7814
NC_015731:169989Nitrosomonas sp. Is79A3 chromosome, complete genome75.2145 %Subject ←→ Query27.6873
NC_006370:166000Photobacterium profundum SS9 chromosome 1, complete sequence76.4828 %Subject ←→ Query28.1736
NC_010634:3269010*Yersinia pseudotuberculosis PB1/+, complete genome81.443 %Subject ←→ Query28.5333
NC_008149:3648139Yersinia pestis Nepal516, complete genome76.777 %Subject ←→ Query29.4565
NC_010465:804249Yersinia pseudotuberculosis YPIII, complete genome75.7812 %Subject ←→ Query29.499
NC_008150:3711953Yersinia pestis Antiqua, complete genome77.2243 %Subject ←→ Query29.7483
NC_008150:2599661Yersinia pestis Antiqua, complete genome80.3278 %Subject ←→ Query29.7787
NC_010995:1459831*Cellvibrio japonicus Ueda107, complete genome75.9467 %Subject ←→ Query29.9125
NC_009654:4624459Marinomonas sp. MWYL1, complete genome75.8364 %Subject ←→ Query30.4991
NC_010995:3863373Cellvibrio japonicus Ueda107, complete genome76.9577 %Subject ←→ Query30.8325
NC_008253:2198583Escherichia coli 536, complete genome75.4871 %Subject ←→ Query30.9551
NC_014010:484000*Candidatus Puniceispirillum marinum IMCC1322 chromosome, complete75.2788 %Subject ←→ Query31.019
NC_006155:3040769Yersinia pseudotuberculosis IP 32953, complete genome79.0349 %Subject ←→ Query31.1041
NC_010634:2960000Yersinia pseudotuberculosis PB1/+, complete genome79.4485 %Subject ←→ Query31.2014
NC_015731:447411Nitrosomonas sp. Is79A3 chromosome, complete genome75.2635 %Subject ←→ Query31.3594
NC_004088:1801819Yersinia pestis KIM, complete genome75.4626 %Subject ←→ Query31.8002
NC_012997:2107933Teredinibacter turnerae T7901, complete genome75.0276 %Subject ←→ Query31.8701
NC_010995:2547164*Cellvibrio japonicus Ueda107, complete genome77.8922 %Subject ←→ Query32.0273
NC_008149:2411161Yersinia pestis Nepal516, complete genome78.0147 %Subject ←→ Query32.2349
NC_010995:3197686Cellvibrio japonicus Ueda107, complete genome75.8333 %Subject ←→ Query32.427
NC_010465:1724000Yersinia pseudotuberculosis YPIII, complete genome77.0558 %Subject ←→ Query32.6727
NC_013592:3397304Dickeya dadantii Ech586, complete genome76.2623 %Subject ←→ Query32.6808
NC_010634:1565788Yersinia pseudotuberculosis PB1/+, complete genome75.095 %Subject ←→ Query33.0113
NC_003143:2849377Yersinia pestis CO92, complete genome78.0178 %Subject ←→ Query33.8521
NC_010159:1861465Yersinia pestis Angola, complete genome78.2292 %Subject ←→ Query33.8947
NC_005810:2613456Yersinia pestis biovar Microtus str. 91001, complete genome77.8799 %Subject ←→ Query33.9433
NC_010465:1427170Yersinia pseudotuberculosis YPIII, complete genome76.0968 %Subject ←→ Query34.0046
NC_010995:1648897*Cellvibrio japonicus Ueda107, complete genome80.095 %Subject ←→ Query34.0285
NC_015224:3191000Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,76.587 %Subject ←→ Query34.0665
NC_010995:2855595*Cellvibrio japonicus Ueda107, complete genome75.8977 %Subject ←→ Query34.0726
NC_010995:404574Cellvibrio japonicus Ueda107, complete genome75.3707 %Subject ←→ Query34.302
NC_014733:1857020Methylovorus sp. MP688 chromosome, complete genome75.4504 %Subject ←→ Query34.8096
NC_008577:1690946*Shewanella sp. ANA-3 chromosome 1, complete sequence75.4105 %Subject ←→ Query34.9418
NC_010995:3821327*Cellvibrio japonicus Ueda107, complete genome77.5214 %Subject ←→ Query35.471
NC_013421:1545386Pectobacterium wasabiae WPP163, complete genome75.0919 %Subject ←→ Query35.9253
NC_013421:1143500Pectobacterium wasabiae WPP163, complete genome76.1213 %Subject ←→ Query36.4256
NC_010995:948041Cellvibrio japonicus Ueda107, complete genome75.7751 %Subject ←→ Query36.5059
NC_010995:4525119Cellvibrio japonicus Ueda107, complete genome76.8045 %Subject ←→ Query36.7553
NC_012962:3568046Photorhabdus asymbiotica, complete genome75.5362 %Subject ←→ Query37.813
NC_010995:1139867Cellvibrio japonicus Ueda107, complete genome80.3125 %Subject ←→ Query37.8817
NC_012962:1661683Photorhabdus asymbiotica, complete genome77.9167 %Subject ← Query40.4188
NC_010814:1551624Geobacter lovleyi SZ, complete genome75.9406 %Subject ← Query44.2581
NC_012779:1286500Edwardsiella ictaluri 93-146, complete genome75.046 %Subject ← Query45.1799