Pre_GI: OUP Neighbours

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Query: NC_014334:99000 Lactobacillus casei str. Zhang chromosome, complete genome

D: 29.7551

Host Lineage: Lactobacillus casei; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Lactobacillus casei str. Zhang was isolated from traditional home-made koumiss (fermented mare's milk) in Inner Mongolia, China. This strain has the potential probiotic properties such as high resistance to acidic pH and bile salt. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, fermented milks, and other products, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully created, cultivated, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus casei is used as a starter culture during milk fermentation and for the flavor development of certain bacterial-ripened cheeses.

Number of Neighbours: 71




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_015222:2475792*Nitrosomonas sp. AL212 chromosome, complete genome77.6869 %Subject ←→ Query26.7854
NC_015731:1731896Nitrosomonas sp. Is79A3 chromosome, complete genome77.0496 %Subject ←→ Query27.058
NC_010999:2516000Lactobacillus casei, complete genome81.9485 %Subject ←→ Query27.1158
NC_015222:523915Nitrosomonas sp. AL212 chromosome, complete genome77.114 %Subject ←→ Query27.4514
NC_015731:2400526*Nitrosomonas sp. Is79A3 chromosome, complete genome77.3468 %Subject ←→ Query27.4684
NC_014334:1848340*Lactobacillus casei str. Zhang chromosome, complete genome82.5 %Subject ←→ Query27.6265
NC_015222:1492500Nitrosomonas sp. AL212 chromosome, complete genome76.1458 %Subject ←→ Query27.6569
NC_015731:169989Nitrosomonas sp. Is79A3 chromosome, complete genome77.6348 %Subject ←→ Query27.6873
NC_015222:1749553*Nitrosomonas sp. AL212 chromosome, complete genome78.511 %Subject ←→ Query27.7237
NC_015222:1905194*Nitrosomonas sp. AL212 chromosome, complete genome75.2298 %Subject ←→ Query27.742
NC_015731:1381737Nitrosomonas sp. Is79A3 chromosome, complete genome76.8229 %Subject ←→ Query28.2344
NC_010999:2450974*Lactobacillus casei, complete genome83.1281 %Subject ←→ Query28.2344
NC_014366:478000*Gamma proteobacterium HdN1, complete genome76.057 %Subject ←→ Query28.2485
NC_008150:4561633*Yersinia pestis Antiqua, complete genome75.2145 %Subject ←→ Query28.4594
NC_015224:4101939*Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,76.5686 %Subject ←→ Query28.505
NC_009138:668000Herminiimonas arsenicoxydans, complete genome76.6912 %Subject ←→ Query28.6266
NC_010465:3958766Yersinia pseudotuberculosis YPIII, complete genome75.4657 %Subject ←→ Query28.7816
NC_008526:74500*Lactobacillus casei ATCC 334, complete genome89.8223 %Subject ←→ Query28.9383
NC_015222:1607757Nitrosomonas sp. AL212 chromosome, complete genome77.3958 %Subject ←→ Query29.1095
NC_004088:4116676Yersinia pestis KIM, complete genome75.5116 %Subject ←→ Query29.2173
NC_009832:4269804Serratia proteamaculans 568, complete genome75.3339 %Subject ←→ Query29.2891
NC_003143:483395*Yersinia pestis CO92, complete genome75.4718 %Subject ←→ Query29.2984
NC_009138:467268Herminiimonas arsenicoxydans, complete genome76.3695 %Subject ←→ Query29.4022
NC_005810:4224500Yersinia pestis biovar Microtus str. 91001, complete genome76.2439 %Subject ←→ Query29.8821
NC_008149:402599*Yersinia pestis Nepal516, complete genome75.7108 %Subject ←→ Query30.0082
NC_006155:713174*Yersinia pseudotuberculosis IP 32953, complete genome75.864 %Subject ←→ Query30.0948
NC_010159:809663Yersinia pestis Angola, complete genome75.7414 %Subject ←→ Query30.5995
NC_013422:991500*Halothiobacillus neapolitanus c2, complete genome78.8143 %Subject ←→ Query30.9399
NC_004088:3923804Yersinia pestis KIM, complete genome75.2574 %Subject ←→ Query31.1466
NC_013198:511795Lactobacillus rhamnosus GG, complete genome80.8303 %Subject ←→ Query31.25
NC_011083:1524337Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,76.0601 %Subject ←→ Query31.3351
NC_005810:3272765Yersinia pestis biovar Microtus str. 91001, complete genome75.4013 %Subject ←→ Query31.3564
NC_015731:447411Nitrosomonas sp. Is79A3 chromosome, complete genome75.9375 %Subject ←→ Query31.3594
NC_013199:1966334*Lactobacillus rhamnosus Lc 705, complete genome80.8088 %Subject ←→ Query31.9404
NC_012917:2971702Pectobacterium carotovorum subsp. carotovorum PC1, complete genome76.0539 %Subject ←→ Query32.0937
NC_014334:589526Lactobacillus casei str. Zhang chromosome, complete genome82.2151 %Subject ←→ Query32.7578
NC_008577:4183361Shewanella sp. ANA-3 chromosome 1, complete sequence75.2053 %Subject ←→ Query32.7699
NC_010999:252605Lactobacillus casei, complete genome81.7096 %Subject ←→ Query32.847
NC_015572:2186394Methylomonas methanica MC09 chromosome, complete genome76.1642 %Subject ←→ Query33.1331
NC_014394:1594071Gallionella capsiferriformans ES-2 chromosome, complete genome75.1532 %Subject ←→ Query33.463
NC_013421:3093995Pectobacterium wasabiae WPP163, complete genome75.5239 %Subject ←→ Query33.4798
NC_015572:1Methylomonas methanica MC09 chromosome, complete genome79.6201 %Subject ←→ Query34.0009
NC_015572:319725Methylomonas methanica MC09 chromosome, complete genome75.4534 %Subject ←→ Query34.8545
NC_008526:250000*Lactobacillus casei ATCC 334, complete genome80.4994 %Subject ←→ Query35.0097
NC_013421:2004088Pectobacterium wasabiae WPP163, complete genome75.5331 %Subject ←→ Query35.1119
NC_014334:267409*Lactobacillus casei str. Zhang chromosome, complete genome82.3162 %Subject ←→ Query35.3356
NC_010554:2646806Proteus mirabilis HI4320, complete genome79.1146 %Subject ←→ Query35.3988
NC_008526:1822000*Lactobacillus casei ATCC 334, complete genome79.6078 %Subject ←→ Query35.8686
NC_010999:1979989*Lactobacillus casei, complete genome81.6513 %Subject ←→ Query36.6636
NC_014334:1775781*Lactobacillus casei str. Zhang chromosome, complete genome82.0496 %Subject ←→ Query36.9239
NC_014010:1850500Candidatus Puniceispirillum marinum IMCC1322 chromosome, complete75.6893 %Subject ←→ Query36.9283
NC_015572:4916430Methylomonas methanica MC09 chromosome, complete genome78.2047 %Subject ←→ Query37.6362
NC_013421:1696746*Pectobacterium wasabiae WPP163, complete genome75.242 %Subject ←→ Query37.8565
NC_012917:2641000Pectobacterium carotovorum subsp. carotovorum PC1, complete genome75.674 %Subject ←→ Query38.1394
NC_004547:1970686*Erwinia carotovora subsp. atroseptica SCRI1043, complete genome76.7371 %Subject ←→ Query38.2099
NC_012691:2146473Tolumonas auensis DSM 9187, complete genome75.3891 %Subject ←→ Query38.7833
NC_014334:769205*Lactobacillus casei str. Zhang chromosome, complete genome80.9161 %Subject ←→ Query39.1896
NC_007712:1219957Sodalis glossinidius str. 'morsitans', complete genome76.3297 %Subject ←→ Query39.2078
CU928160:1978500*Escherichia coli IAI1 chromosome, complete genome75.0705 %Subject Query39.8184
NC_012691:3126500Tolumonas auensis DSM 9187, complete genome75.3523 %Subject Query40.5946
NC_008526:343445Lactobacillus casei ATCC 334, complete genome75.4933 %Subject Query41.5674
NC_015554:4724245*Alteromonas sp. SN2 chromosome, complete genome75.3248 %Subject Query42.0329
NC_013037:2851940*Dyadobacter fermentans DSM 18053, complete genome75.0276 %Subject Query42.1898
NC_015567:1660462Serratia sp. AS9 chromosome, complete genome78.1985 %Subject Query42.6158
NC_012917:3241196Pectobacterium carotovorum subsp. carotovorum PC1, complete genome75.2788 %Subject Query42.9492
NC_015566:1659288Serratia sp. AS12 chromosome, complete genome78.1893 %Subject Query44.7005
NC_015663:3466471*Enterobacter aerogenes KCTC 2190 chromosome, complete genome75.4565 %Subject Query46.0588
NC_008573:195317Shewanella sp. ANA-3 plasmid 1, complete sequence75.4902 %Subject Query46.5154
NC_009832:1719149Serratia proteamaculans 568, complete genome75.527 %Subject Query48.0067
NC_010611:240839Acinetobacter baumannii ACICU, complete genome77.0374 %Subject Query48.2217
NC_012880:3421500*Dickeya dadantii Ech703, complete genome76.7678 %Subject Query54.2571