Pre_GI: OUP Neighbours

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Query: NC_014334:769205 Lactobacillus casei str. Zhang chromosome, complete genome

D: 39.1896

Host Lineage: Lactobacillus casei; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Lactobacillus casei str. Zhang was isolated from traditional home-made koumiss (fermented mare's milk) in Inner Mongolia, China. This strain has the potential probiotic properties such as high resistance to acidic pH and bile salt. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, fermented milks, and other products, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully created, cultivated, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus casei is used as a starter culture during milk fermentation and for the flavor development of certain bacterial-ripened cheeses.

Number of Neighbours: 20

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_010999:2516000Lactobacillus casei, complete genome80.5852 %Subject Query27.1158
NC_014334:1848340*Lactobacillus casei str. Zhang chromosome, complete genome78.8879 %Subject Query27.6265
NC_015222:1749553*Nitrosomonas sp. AL212 chromosome, complete genome77.3009 %Subject Query27.7237
NC_010999:2450974*Lactobacillus casei, complete genome79.3627 %Subject Query28.2344
NC_014366:478000*Gamma proteobacterium HdN1, complete genome76.2316 %Subject Query28.2485
NC_008526:74500*Lactobacillus casei ATCC 334, complete genome82.5705 %Subject Query28.9383
NC_014334:99000*Lactobacillus casei str. Zhang chromosome, complete genome80.9161 %Subject ←→ Query29.7551
NC_013198:511795Lactobacillus rhamnosus GG, complete genome78.0944 %Subject ←→ Query31.25
NC_013199:1966334*Lactobacillus rhamnosus Lc 705, complete genome77.7237 %Subject ←→ Query31.9404
NC_014334:589526Lactobacillus casei str. Zhang chromosome, complete genome79.5956 %Subject ←→ Query32.7578
NC_010999:252605Lactobacillus casei, complete genome81.8781 %Subject ←→ Query32.847
NC_015572:1Methylomonas methanica MC09 chromosome, complete genome77.3683 %Subject ←→ Query34.0009
NC_008526:250000*Lactobacillus casei ATCC 334, complete genome81.8811 %Subject ←→ Query35.0097
NC_014334:267409*Lactobacillus casei str. Zhang chromosome, complete genome82.2886 %Subject ←→ Query35.3356
NC_010554:2646806Proteus mirabilis HI4320, complete genome78.3762 %Subject ←→ Query35.3988
NC_008526:1822000*Lactobacillus casei ATCC 334, complete genome82.3192 %Subject ←→ Query35.8686
NC_010999:1979989*Lactobacillus casei, complete genome84.2708 %Subject ←→ Query36.6636
NC_014334:1775781*Lactobacillus casei str. Zhang chromosome, complete genome84.8652 %Subject ←→ Query36.9239
NC_015572:4916430Methylomonas methanica MC09 chromosome, complete genome75.9835 %Subject ←→ Query37.6362
NC_010611:240839Acinetobacter baumannii ACICU, complete genome75.4351 %Subject ←→ Query48.2217