Pre_GI: OUP Neighbours

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Query: NC_014334:589526 Lactobacillus casei str. Zhang chromosome, complete genome

D: 32.7578

Host Lineage: Lactobacillus casei; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Lactobacillus casei str. Zhang was isolated from traditional home-made koumiss (fermented mare's milk) in Inner Mongolia, China. This strain has the potential probiotic properties such as high resistance to acidic pH and bile salt. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, fermented milks, and other products, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully created, cultivated, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus casei is used as a starter culture during milk fermentation and for the flavor development of certain bacterial-ripened cheeses.

Number of Neighbours: 62

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_007520:2391675Thiomicrospira crunogena XCL-2, complete genome79.1299 %Subject ←→ Query26.1369
NC_010999:2516000Lactobacillus casei, complete genome82.2089 %Subject ←→ Query27.1158
NC_014334:1848340*Lactobacillus casei str. Zhang chromosome, complete genome82.9749 %Subject ←→ Query27.6265
NC_010473:2548946*Escherichia coli str. K-12 substr. DH10B, complete genome75.046 %Subject ←→ Query27.6552
NC_015731:169989Nitrosomonas sp. Is79A3 chromosome, complete genome76.5901 %Subject ←→ Query27.6873
NC_015222:1749553*Nitrosomonas sp. AL212 chromosome, complete genome75.5484 %Subject ←→ Query27.7237
CP002516:1419413Escherichia coli KO11, complete genome75.9191 %Subject ←→ Query27.8755
NC_005140:1820970Vibrio vulnificus YJ016 chromosome II, complete sequence76.5288 %Subject ←→ Query27.8788
NC_008526:465453Lactobacillus casei ATCC 334, complete genome75.5729 %Subject ←→ Query28.1995
NC_010999:2450974*Lactobacillus casei, complete genome83.3333 %Subject ←→ Query28.2344
AC_000091:2027648*Escherichia coli W3110 DNA, complete genome75.1838 %Subject ←→ Query28.5209
NC_009138:668000Herminiimonas arsenicoxydans, complete genome75.481 %Subject ←→ Query28.6266
NC_008526:74500*Lactobacillus casei ATCC 334, complete genome84.1881 %Subject ←→ Query28.9383
NC_010473:2119480*Escherichia coli str. K-12 substr. DH10B, complete genome75.9988 %Subject ←→ Query28.9543
NC_000913:2042935*Escherichia coli K12, complete genome75.3768 %Subject ←→ Query29.3334
NC_010999:524905Lactobacillus casei, complete genome76.0601 %Subject ←→ Query29.347
NC_015224:2061951*Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,75.5913 %Subject ←→ Query29.6
NC_014334:99000*Lactobacillus casei str. Zhang chromosome, complete genome82.2151 %Subject ←→ Query29.7551
NC_004460:973738Vibrio vulnificus CMCP6 chromosome II, complete sequence78.6274 %Subject ←→ Query30.5138
NC_015428:2291430*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome78.9001 %Subject ←→ Query30.5599
NC_013422:991500*Halothiobacillus neapolitanus c2, complete genome75.2696 %Subject ←→ Query30.9399
NC_014334:493308Lactobacillus casei str. Zhang chromosome, complete genome76.7034 %Subject ←→ Query30.9399
NC_008563:2610499Escherichia coli APEC O1, complete genome75.8548 %Subject ←→ Query31.1081
NC_013198:511795Lactobacillus rhamnosus GG, complete genome83.027 %Subject ←→ Query31.25
NC_015731:447411Nitrosomonas sp. Is79A3 chromosome, complete genome76.155 %Subject ←→ Query31.3594
NC_004459:1794540*Vibrio vulnificus CMCP6 chromosome I, complete sequence76.8964 %Subject ←→ Query31.6148
NC_007520:2128178*Thiomicrospira crunogena XCL-2, complete genome76.777 %Subject ←→ Query31.6498
NC_009800:2505872*Escherichia coli HS, complete genome75.8119 %Subject ←→ Query31.8884
NC_010658:2529033*Shigella boydii CDC 3083-94, complete genome75.4718 %Subject ←→ Query31.9066
NC_013199:1966334*Lactobacillus rhamnosus Lc 705, complete genome81.3205 %Subject ←→ Query31.9404
NC_010999:252605Lactobacillus casei, complete genome78.2874 %Subject ←→ Query32.847
NC_015572:2186394Methylomonas methanica MC09 chromosome, complete genome75.671 %Subject ←→ Query33.1331
NC_013198:1921500*Lactobacillus rhamnosus GG, complete genome77.3744 %Subject ←→ Query33.277
NC_004460:1313468Vibrio vulnificus CMCP6 chromosome II, complete sequence76.9761 %Subject ←→ Query33.3414
NC_004460:1237129Vibrio vulnificus CMCP6 chromosome II, complete sequence75.3064 %Subject ←→ Query33.7123
NC_013198:298000*Lactobacillus rhamnosus GG, complete genome76.8536 %Subject ←→ Query33.8795
NC_015572:1Methylomonas methanica MC09 chromosome, complete genome77.7114 %Subject ←→ Query34.0009
NC_015559:2434000*Marinomonas posidonica IVIA-Po-181 chromosome, complete genome75.8946 %Subject ←→ Query34.7215
NC_008526:250000*Lactobacillus casei ATCC 334, complete genome76.8689 %Subject ←→ Query35.0097
NC_013199:1886271*Lactobacillus rhamnosus Lc 705, complete genome76.5931 %Subject ←→ Query35.0179
NC_014334:267409*Lactobacillus casei str. Zhang chromosome, complete genome78.9246 %Subject ←→ Query35.3356
NC_010554:2646806Proteus mirabilis HI4320, complete genome77.1875 %Subject ←→ Query35.3988
NC_008526:1822000*Lactobacillus casei ATCC 334, complete genome78.4467 %Subject ←→ Query35.8686
NC_008526:817628*Lactobacillus casei ATCC 334, complete genome76.3787 %Subject ←→ Query36.4528
NC_010999:1979989*Lactobacillus casei, complete genome79.7672 %Subject ←→ Query36.6636
NC_012691:779826*Tolumonas auensis DSM 9187, complete genome75.7445 %Subject ←→ Query36.9103
NC_014334:1775781*Lactobacillus casei str. Zhang chromosome, complete genome79.8652 %Subject ←→ Query36.9239
NC_014010:1850500Candidatus Puniceispirillum marinum IMCC1322 chromosome, complete77.598 %Subject ←→ Query36.9283
NC_008750:2332000Shewanella sp. W3-18-1, complete genome76.0846 %Subject ←→ Query37.2143
NC_015428:823420*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome76.633 %Subject ←→ Query37.54
NC_002506:207097*Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete77.598 %Subject ←→ Query37.898
NC_004349:3938Shewanella oneidensis MR-1 plasmid pMR-1, complete sequence75.3278 %Subject ←→ Query38.1809
NC_012691:2146473Tolumonas auensis DSM 9187, complete genome76.5809 %Subject ←→ Query38.7833
NC_015428:700479*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome76.6268 %Subject ←→ Query38.8838
NC_014334:769205*Lactobacillus casei str. Zhang chromosome, complete genome79.5956 %Subject ←→ Query39.1896
NC_013199:811929*Lactobacillus rhamnosus Lc 705, complete genome76.155 %Subject ←→ Query39.2072
NC_010999:880878*Lactobacillus casei, complete genome75.9191 %Subject ←→ Query40.5776
NC_015554:4724245*Alteromonas sp. SN2 chromosome, complete genome75.8303 %Subject ←→ Query42.0329
NC_013037:2851940*Dyadobacter fermentans DSM 18053, complete genome75.5024 %Subject ←→ Query42.1898
NC_011138:3182807*Alteromonas macleodii 'Deep ecotype', complete genome75.1716 %Subject Query44.8872
NC_008573:195317Shewanella sp. ANA-3 plasmid 1, complete sequence76.9393 %Subject Query46.5154
NC_010611:240839Acinetobacter baumannii ACICU, complete genome77.6348 %Subject Query48.2217