Pre_GI: OUP Neighbours

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Query: NC_014334:267409 Lactobacillus casei str. Zhang chromosome, complete genome

D: 35.3356

Host Lineage: Lactobacillus casei; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Lactobacillus casei str. Zhang was isolated from traditional home-made koumiss (fermented mare's milk) in Inner Mongolia, China. This strain has the potential probiotic properties such as high resistance to acidic pH and bile salt. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, fermented milks, and other products, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully created, cultivated, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus casei is used as a starter culture during milk fermentation and for the flavor development of certain bacterial-ripened cheeses.

Number of Neighbours: 28




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_010999:2516000Lactobacillus casei, complete genome80.3922 %Subject ←→ Query27.1158
NC_014334:1848340*Lactobacillus casei str. Zhang chromosome, complete genome79.1973 %Subject ←→ Query27.6265
NC_010999:2450974*Lactobacillus casei, complete genome80.9957 %Subject ←→ Query28.2344
NC_014366:478000*Gamma proteobacterium HdN1, complete genome76.2408 %Subject ←→ Query28.2485
NC_008526:74500*Lactobacillus casei ATCC 334, complete genome83.3211 %Subject ←→ Query28.9383
NC_009138:467268Herminiimonas arsenicoxydans, complete genome75.2053 %Subject ←→ Query29.4022
NC_014334:99000*Lactobacillus casei str. Zhang chromosome, complete genome82.3162 %Subject ←→ Query29.7551
NC_013422:991500*Halothiobacillus neapolitanus c2, complete genome75.0092 %Subject ←→ Query30.9399
NC_013198:511795Lactobacillus rhamnosus GG, complete genome77.7911 %Subject ←→ Query31.25
NC_013199:1966334*Lactobacillus rhamnosus Lc 705, complete genome78.4375 %Subject ←→ Query31.9404
NC_014334:589526Lactobacillus casei str. Zhang chromosome, complete genome78.9246 %Subject ←→ Query32.7578
NC_008577:4183361Shewanella sp. ANA-3 chromosome 1, complete sequence75.6403 %Subject ←→ Query32.7699
NC_010999:252605Lactobacillus casei, complete genome93.2904 %Subject ←→ Query32.847
NC_015572:1Methylomonas methanica MC09 chromosome, complete genome78.4375 %Subject ←→ Query34.0009
NC_015572:319725Methylomonas methanica MC09 chromosome, complete genome75.3922 %Subject ←→ Query34.8545
NC_008526:250000*Lactobacillus casei ATCC 334, complete genome93.1587 %Subject ←→ Query35.0097
NC_010554:2646806Proteus mirabilis HI4320, complete genome78.9246 %Subject ←→ Query35.3988
NC_008526:1822000*Lactobacillus casei ATCC 334, complete genome84.9632 %Subject ←→ Query35.8686
NC_010999:1979989*Lactobacillus casei, complete genome86.3511 %Subject ←→ Query36.6636
NC_014334:1775781*Lactobacillus casei str. Zhang chromosome, complete genome86.731 %Subject ←→ Query36.9239
NC_015572:4916430Methylomonas methanica MC09 chromosome, complete genome76.7831 %Subject ←→ Query37.6362
NC_014334:769205*Lactobacillus casei str. Zhang chromosome, complete genome82.2886 %Subject ←→ Query39.1896
NC_008526:343445Lactobacillus casei ATCC 334, complete genome76.296 %Subject ←→ Query41.5674
NC_015554:4724245*Alteromonas sp. SN2 chromosome, complete genome75.0306 %Subject ←→ Query42.0329
NC_015567:1660462Serratia sp. AS9 chromosome, complete genome75.9314 %Subject ←→ Query42.6158
NC_015566:1659288Serratia sp. AS12 chromosome, complete genome75.6587 %Subject ←→ Query44.7005
NC_008573:195317Shewanella sp. ANA-3 plasmid 1, complete sequence76.2623 %Subject Query46.5154
NC_010611:240839Acinetobacter baumannii ACICU, complete genome76.0325 %Subject Query48.2217