Pre_GI: OUP Neighbours

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Query: NC_013410:3017983 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

D: 39.5455

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

Number of Neighbours: 92




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_013410:1651000Fibrobacter succinogenes subsp. succinogenes S85 chromosome,86.2439 %Subject ←→ Query41.1187
NC_013410:2586500*Fibrobacter succinogenes subsp. succinogenes S85 chromosome,85.2237 %Subject ←→ Query38.5251
NC_006510:746814Geobacillus kaustophilus HTA426, complete genome77.7911 %Subject ←→ Query29.7149
NC_006510:310212*Geobacillus kaustophilus HTA426, complete genome78.03 %Subject ←→ Query37.0244
NC_006510:2044347Geobacillus kaustophilus HTA426, complete genome77.2549 %Subject ←→ Query36.7248
NC_006510:1731939*Geobacillus kaustophilus HTA426, complete genome76.8689 %Subject ←→ Query41.4725
NC_014206:2912945*Geobacillus sp. C56-T3 chromosome, complete genome76.9577 %Subject ←→ Query33.1624
NC_014206:2807879Geobacillus sp. C56-T3 chromosome, complete genome75.6311 %Subject ←→ Query33.381
NC_014206:2516000Geobacillus sp. C56-T3 chromosome, complete genome78.2108 %Subject ←→ Query32.7839
NC_014206:1745203Geobacillus sp. C56-T3 chromosome, complete genome75.7476 %Subject ←→ Query31.8511
NC_014206:345499*Geobacillus sp. C56-T3 chromosome, complete genome77.4357 %Subject ←→ Query35.3994
NC_014206:2941575Geobacillus sp. C56-T3 chromosome, complete genome78.223 %Subject ←→ Query31.49
NC_020210:1704500*Geobacillus sp. GHH01, complete genome76.4001 %Subject ←→ Query36.4011
NC_020210:788639Geobacillus sp. GHH01, complete genome76.155 %Subject ←→ Query36.4102
NC_020210:661236*Geobacillus sp. GHH01, complete genome75.1746 %Subject ←→ Query35.9201
NC_020210:1908000Geobacillus sp. GHH01, complete genome75.432 %Subject ←→ Query32.7008
NC_012793:3243727Geobacillus sp. WCH70, complete genome76.5502 %Subject ←→ Query33.5494
NC_014650:2417509Geobacillus sp. Y4.1MC1 chromosome, complete genome76.8321 %Subject ←→ Query29.9966
NC_014915:2963500Geobacillus sp. Y412MC52 chromosome, complete genome75.5055 %Subject ←→ Query36.3336
NC_014915:2092678Geobacillus sp. Y412MC52 chromosome, complete genome75.5239 %Subject ←→ Query33.7161
NC_014915:1909275Geobacillus sp. Y412MC52 chromosome, complete genome75.8517 %Subject ←→ Query36.0595
NC_014915:1080793Geobacillus sp. Y412MC52 chromosome, complete genome76.5104 %Subject ←→ Query34.7963
NC_014915:727631*Geobacillus sp. Y412MC52 chromosome, complete genome76.6238 %Subject Query27.4562
NC_014915:595569Geobacillus sp. Y412MC52 chromosome, complete genome76.2102 %Subject ←→ Query41.0221
NC_014915:308056*Geobacillus sp. Y412MC52 chromosome, complete genome77.5858 %Subject ←→ Query30.3414
NC_013411:2739989Geobacillus sp. Y412MC61, complete genome75.9835 %Subject Query28.6055
NC_013411:1941762Geobacillus sp. Y412MC61, complete genome76.9853 %Subject ←→ Query35.4059
NC_013411:1587689*Geobacillus sp. Y412MC61, complete genome76.008 %Subject ←→ Query29.6612
NC_013411:1454465Geobacillus sp. Y412MC61, complete genome76.1458 %Subject ←→ Query39.8118
NC_013411:1168049*Geobacillus sp. Y412MC61, complete genome77.5858 %Subject ←→ Query30.6232
NC_013411:2975364Geobacillus sp. Y412MC61, complete genome75.4197 %Subject ←→ Query35.9085
NC_013411:2767400Geobacillus sp. Y412MC61, complete genome75.3217 %Subject ←→ Query32.8925
NC_009328:3504454*Geobacillus thermodenitrificans NG80-2 chromosome, complete genome75.8364 %Subject ←→ Query37.3039
NC_009328:293000*Geobacillus thermodenitrificans NG80-2 chromosome, complete genome75.2482 %Subject ←→ Query40.7302
NC_009328:2905000Geobacillus thermodenitrificans NG80-2 chromosome, complete genome76.7892 %Subject ←→ Query33.2415
NC_009328:2808897*Geobacillus thermodenitrificans NG80-2 chromosome, complete genome75.3248 %Subject ←→ Query33.1291
NC_009328:2083386*Geobacillus thermodenitrificans NG80-2 chromosome, complete genome76.2224 %Subject ←→ Query39.9075
NC_016593:2447938Geobacillus thermoleovorans CCB_US3_UF5 chromosome, complete76.4185 %Subject ←→ Query35.0057
NC_016593:981500Geobacillus thermoleovorans CCB_US3_UF5 chromosome, complete76.4461 %Subject ←→ Query41.6272
NC_016593:956839Geobacillus thermoleovorans CCB_US3_UF5 chromosome, complete76.2132 %Subject ←→ Query32.3893
NC_016593:762216*Geobacillus thermoleovorans CCB_US3_UF5 chromosome, complete77.7911 %Subject ←→ Query32.744
NC_016593:353505Geobacillus thermoleovorans CCB_US3_UF5 chromosome, complete77.4449 %Subject ←→ Query35.6153
NC_016593:3402205Geobacillus thermoleovorans CCB_US3_UF5 chromosome, complete76.6146 %Subject ←→ Query38.6627
NC_016593:3249767Geobacillus thermoleovorans CCB_US3_UF5 chromosome, complete75.3523 %Subject Query29.1383
NC_015975:441580*Lactobacillus ruminis ATCC 27782 chromosome, complete genome77.837 %Subject ←→ Query32.2212
NC_015975:1936504*Lactobacillus ruminis ATCC 27782 chromosome, complete genome79.0993 %Subject ←→ Query33.1165