Pre_GI: OUP Neighbours

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Query: NC_013410:1591500 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

D: 36.7668

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

Number of Neighbours: 38




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_019897:4131337Thermobacillus composti KWC4 chromosome, complete genome77.3989 %Subject Query25.2949
NC_020272:2748733*Bacillus amyloliquefaciens IT-45, complete genome75.4136 %Subject ←→ Query28.5141
NC_014650:2969866*Geobacillus sp. Y4.1MC1 chromosome, complete genome76.3021 %Subject ←→ Query28.9698
NC_006270:3418097Bacillus licheniformis ATCC 14580, complete genome76.6023 %Subject ←→ Query31.8658
NC_020210:1275031*Geobacillus sp. GHH01, complete genome81.1305 %Subject ←→ Query33.58
NC_016593:596500Geobacillus thermoleovorans CCB_US3_UF5 chromosome, complete78.3977 %Subject ←→ Query34.0351
NC_006270:718169*Bacillus licheniformis ATCC 14580, complete genome76.1458 %Subject ←→ Query34.0791
NC_006270:204000*Bacillus licheniformis ATCC 14580, complete genome77.3131 %Subject ←→ Query34.2838
NC_006270:568171*Bacillus licheniformis ATCC 14580, complete genome75.7721 %Subject ←→ Query34.4572
NC_016112:1330500*Methylomicrobium alcaliphilum chromosome, complete genome75.7782 %Subject ←→ Query34.6108
NC_006270:3627974Bacillus licheniformis ATCC 14580, complete genome75.5637 %Subject ←→ Query35.0394
NC_014650:304441Geobacillus sp. Y4.1MC1 chromosome, complete genome77.6899 %Subject ←→ Query35.3232
NC_006270:2657726*Bacillus licheniformis ATCC 14580, complete genome76.6085 %Subject ←→ Query36.0328
NC_006270:741731*Bacillus licheniformis ATCC 14580, complete genome78.2292 %Subject ←→ Query36.8552
NC_013410:1152188*Fibrobacter succinogenes subsp. succinogenes S85 chromosome,78.5509 %Subject ←→ Query37.6377
NC_016641:438500Paenibacillus terrae HPL-003 chromosome, complete genome77.9596 %Subject ←→ Query38.2461
NC_009328:2378345Geobacillus thermodenitrificans NG80-2 chromosome, complete genome79.1391 %Subject ←→ Query39.8234
NC_020210:2133996*Geobacillus sp. GHH01, complete genome79.6017 %Subject ←→ Query41.2844
NC_013037:6281164*Dyadobacter fermentans DSM 18053, complete genome76.6146 %Subject ←→ Query45.9244