Pre_GI: OUP Neighbours

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Query: NC_013199:845000 Lactobacillus rhamnosus Lc 705, complete genome

D: 33.8589

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.

Number of Neighbours: 90

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_016011:678419Listeria ivanovii subsp. ivanovii PAM 55, complete genome75.9467 %Subject Query19.8549
NC_014136:329484Leuconostoc kimchii IMSNU11154 chromosome, complete genome78.2966 %Subject Query20.2253
NC_015930:821342Lactococcus garvieae ATCC 49156, complete genome75.0919 %Subject Query20.8694
NC_003212:2413824*Listeria innocua Clip11262, complete genome75.0123 %Subject Query21.9155
NC_009513:870837Lactobacillus reuteri F275, complete genome75.5607 %Subject Query22.0209
NC_015391:504227Carnobacterium sp. 17-4 chromosome, complete genome75.9957 %Subject Query22.3067
NC_003212:1713958Listeria innocua Clip11262, complete genome75.1072 %Subject Query22.5827
NC_015697:256000*Lactobacillus reuteri SD2112 chromosome, complete genome76.5993 %Subject Query23.2612
NC_009848:2335265Bacillus pumilus SAFR-032, complete genome75.1379 %Subject Query23.4436
NC_014334:1039248Lactobacillus casei str. Zhang chromosome, complete genome77.8952 %Subject ←→ Query24.0151
NC_002663:62500Pasteurella multocida subsp. multocida str. Pm70, complete genome75.0582 %Subject ←→ Query24.6055
NC_014319:1613611Leuconostoc gasicomitatum LMG 18811, complete genome77.2549 %Subject ←→ Query24.79
NC_014334:2696000Lactobacillus casei str. Zhang chromosome, complete genome79.1912 %Subject ←→ Query25.2128
NC_014334:2307950Lactobacillus casei str. Zhang chromosome, complete genome77.9381 %Subject ←→ Query25.5593
NC_010999:349252Lactobacillus casei, complete genome79.1115 %Subject ←→ Query25.611
NC_009848:354202*Bacillus pumilus SAFR-032, complete genome75.0398 %Subject ←→ Query25.7688
NC_010080:1885677Lactobacillus helveticus DPC 4571, complete genome75.2175 %Subject ←→ Query25.9241
NC_010080:1911932Lactobacillus helveticus DPC 4571, complete genome76.9148 %Subject ←→ Query25.9336
NC_014334:369974Lactobacillus casei str. Zhang chromosome, complete genome82.0619 %Subject ←→ Query26.4531
NC_010999:2059738Lactobacillus casei, complete genome77.5245 %Subject ←→ Query26.5655
NC_014724:1101950Lactobacillus amylovorus GRL 1112 chromosome, complete genome77.9688 %Subject ←→ Query26.6698
NC_015428:1483768Lactobacillus buchneri NRRL B-30929 chromosome, complete genome81.1244 %Subject ←→ Query26.7814
NC_008526:2373190Lactobacillus casei ATCC 334, complete genome76.2561 %Subject ←→ Query26.8543
NC_015975:1593797Lactobacillus ruminis ATCC 27782 chromosome, complete genome75.0766 %Subject ←→ Query26.9455
NC_013166:194614*Kangiella koreensis DSM 16069, complete genome75.288 %Subject ←→ Query27.042
NC_010999:2516000Lactobacillus casei, complete genome76.6789 %Subject ←→ Query27.1158
NC_010999:2483000Lactobacillus casei, complete genome77.163 %Subject ←→ Query27.2718
NC_008526:1973500Lactobacillus casei ATCC 334, complete genome76.2102 %Subject ←→ Query27.286
NC_014479:3825195*Bacillus subtilis subsp. spizizenii str. W23 chromosome, complete75.5944 %Subject ←→ Query27.6174
NC_015222:94847Nitrosomonas sp. AL212 chromosome, complete genome75.3431 %Subject ←→ Query27.6612
NC_015222:1749553*Nitrosomonas sp. AL212 chromosome, complete genome75.7935 %Subject ←→ Query27.7237
NC_012984:1027898Lactobacillus plantarum JDM1, complete genome75.3922 %Subject ←→ Query27.8362
NC_005140:660305Vibrio vulnificus YJ016 chromosome II, complete sequence77.4908 %Subject ←→ Query27.8453
NC_014976:2867454Bacillus subtilis BSn5 chromosome, complete genome75.0827 %Subject ←→ Query27.8605
NC_015975:789312Lactobacillus ruminis ATCC 27782 chromosome, complete genome77.739 %Subject ←→ Query27.8749
NC_015975:558523*Lactobacillus ruminis ATCC 27782 chromosome, complete genome75.8303 %Subject ←→ Query28.1514
NC_009800:320115Escherichia coli HS, complete genome75.913 %Subject ←→ Query28.201
NC_010999:2450974*Lactobacillus casei, complete genome78.1679 %Subject ←→ Query28.2344
NC_004460:81687Vibrio vulnificus CMCP6 chromosome II, complete sequence77.9351 %Subject ←→ Query28.2861
NC_008497:1111891*Lactobacillus brevis ATCC 367, complete genome76.777 %Subject ←→ Query28.4188
NC_013199:1150000Lactobacillus rhamnosus Lc 705, complete genome76.0631 %Subject ←→ Query28.4351
NC_014479:1961692Bacillus subtilis subsp. spizizenii str. W23 chromosome, complete76.3205 %Subject ←→ Query28.4781
NC_013895:1086500*Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete75.3523 %Subject ←→ Query28.8667
NC_008526:74500*Lactobacillus casei ATCC 334, complete genome77.9351 %Subject ←→ Query28.9383
NC_010999:1245239Lactobacillus casei, complete genome79.7151 %Subject ←→ Query29.2811
NC_009783:1956000Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequence75.7414 %Subject ←→ Query29.2954
NC_000964:2670288Bacillus subtilis subsp. subtilis str. 168, complete genome75.9681 %Subject ←→ Query29.3065
NC_014334:37040Lactobacillus casei str. Zhang chromosome, complete genome78.5784 %Subject ←→ Query29.347
NC_012984:520000Lactobacillus plantarum JDM1, complete genome77.6134 %Subject ←→ Query29.4929
NC_013199:1407742*Lactobacillus rhamnosus Lc 705, complete genome78.8603 %Subject ←→ Query29.5477
NC_013199:392450*Lactobacillus rhamnosus Lc 705, complete genome78.0913 %Subject ←→ Query29.6644
NC_010999:623489Lactobacillus casei, complete genome76.3726 %Subject ←→ Query29.8391
NC_013198:2458080Lactobacillus rhamnosus GG, complete genome75.9865 %Subject ←→ Query29.954
NC_008526:506263Lactobacillus casei ATCC 334, complete genome85.7138 %Subject ←→ Query30.2894
NC_015975:752927*Lactobacillus ruminis ATCC 27782 chromosome, complete genome75.8578 %Subject ←→ Query30.478
NC_009513:169146*Lactobacillus reuteri F275, complete genome75.1562 %Subject ←→ Query30.5164
NC_013199:2386924Lactobacillus rhamnosus Lc 705, complete genome77.8309 %Subject ←→ Query30.5957
NC_013198:1030970*Lactobacillus rhamnosus GG, complete genome76.8474 %Subject ←→ Query30.8386
NC_010999:561914Lactobacillus casei, complete genome86.1366 %Subject ←→ Query30.939
NC_015214:1458480Lactobacillus acidophilus 30SC chromosome, complete genome77.2825 %Subject ←→ Query31.0242
NC_013198:394000*Lactobacillus rhamnosus GG, complete genome77.8676 %Subject ←→ Query31.056
NC_008322:2077628*Shewanella sp. MR-7, complete genome75.6127 %Subject ←→ Query31.0943
NC_008529:1133665Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete75.7506 %Subject ←→ Query31.098
NC_010999:1381497*Lactobacillus casei, complete genome79.5772 %Subject ←→ Query31.3851
NC_013198:36829Lactobacillus rhamnosus GG, complete genome76.2377 %Subject ←→ Query31.5674
NC_008054:1117703*Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete75.5576 %Subject ←→ Query31.8215
NC_004668:3184319*Enterococcus faecalis V583, complete genome75.9651 %Subject ←→ Query31.8458
NC_010999:2155714Lactobacillus casei, complete genome76.345 %Subject ←→ Query31.9385
NC_013199:1966334*Lactobacillus rhamnosus Lc 705, complete genome78.462 %Subject ←→ Query31.9404
NC_014727:889132Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,75.3462 %Subject ←→ Query32.2258
NC_013198:1095591Lactobacillus rhamnosus GG, complete genome87.4357 %Subject ←→ Query32.5093
NC_008526:1924761Lactobacillus casei ATCC 334, complete genome84.7243 %Subject ←→ Query32.8703
NC_012491:3704000Brevibacillus brevis NBRC 100599, complete genome75.0735 %Subject ←→ Query33.2928
NC_014334:1954333Lactobacillus casei str. Zhang chromosome, complete genome75.5178 %Subject ←→ Query33.3293
NC_013198:1538792*Lactobacillus rhamnosus GG, complete genome80.0582 %Subject ←→ Query33.5442
NC_008577:2511326Shewanella sp. ANA-3 chromosome 1, complete sequence76.008 %Subject ←→ Query33.6393
NC_013199:2058857*Lactobacillus rhamnosus Lc 705, complete genome77.8033 %Subject ←→ Query33.7873
NC_015572:1Methylomonas methanica MC09 chromosome, complete genome77.068 %Subject ←→ Query34.0009
NC_013166:82986Kangiella koreensis DSM 16069, complete genome76.2929 %Subject ←→ Query34.1481
NC_006322:3418268Bacillus licheniformis ATCC 14580, complete genome76.0233 %Subject ←→ Query34.2705
NC_014727:1220869Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,77.4418 %Subject ←→ Query34.3211
NC_015975:1056731*Lactobacillus ruminis ATCC 27782 chromosome, complete genome76.152 %Subject ←→ Query34.5635
NC_008322:1186000*Shewanella sp. MR-7, complete genome76.6023 %Subject ←→ Query34.6086
NC_013198:2088780*Lactobacillus rhamnosus GG, complete genome77.5735 %Subject ←→ Query35.0489
NC_002505:1892430*Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete76.5502 %Subject ←→ Query35.2857
NC_008529:1042220*Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete75.2635 %Subject ←→ Query35.6044
NC_012691:2097287*Tolumonas auensis DSM 9187, complete genome75.9099 %Subject ←→ Query35.9123
NC_015634:2595500Bacillus coagulans 2-6 chromosome, complete genome75.0245 %Subject ←→ Query35.9909
NC_013406:3672857Paenibacillus sp. Y412MC10 chromosome, complete genome75.7598 %Subject ←→ Query39.5404
NC_015214:1853106Lactobacillus acidophilus 30SC chromosome, complete genome75.0214 %Subject ←→ Query43.7956