Pre_GI: OUP Neighbours

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Query: NC_013199:1966334 Lactobacillus rhamnosus Lc 705, complete genome

D: 31.9404

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.

Number of Neighbours: 165

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_015428:193817Lactobacillus buchneri NRRL B-30929 chromosome, complete genome77.7145 %Subject ←→ Query22.7687
NC_015697:116000*Lactobacillus reuteri SD2112 chromosome, complete genome77.4847 %Subject ←→ Query22.793
NC_015428:2019500*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome76.1857 %Subject ←→ Query23.2156
NC_015697:256000*Lactobacillus reuteri SD2112 chromosome, complete genome76.8689 %Subject ←→ Query23.2612
NC_014334:1039248Lactobacillus casei str. Zhang chromosome, complete genome80.9651 %Subject ←→ Query24.0151
NC_002973:1877905*Listeria monocytogenes str. 4b F2365, complete genome75.6832 %Subject ←→ Query24.5987
NC_014334:2696000Lactobacillus casei str. Zhang chromosome, complete genome82.114 %Subject ←→ Query25.2128
NC_014334:2307950Lactobacillus casei str. Zhang chromosome, complete genome81.1305 %Subject ←→ Query25.5593
NC_010999:349252Lactobacillus casei, complete genome78.6765 %Subject ←→ Query25.611
NC_015428:1544728*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome75.7108 %Subject ←→ Query25.6452
NC_010080:1885677Lactobacillus helveticus DPC 4571, complete genome81.3327 %Subject ←→ Query25.9241
NC_010080:1911932Lactobacillus helveticus DPC 4571, complete genome78.7714 %Subject ←→ Query25.9336
NC_014334:369974Lactobacillus casei str. Zhang chromosome, complete genome82.2641 %Subject ←→ Query26.4531
NC_010999:2059738Lactobacillus casei, complete genome80.2941 %Subject ←→ Query26.5655
NC_012913:280506Aggregatibacter aphrophilus NJ8700, complete genome76.2806 %Subject ←→ Query26.6691
NC_015428:1483768Lactobacillus buchneri NRRL B-30929 chromosome, complete genome76.8168 %Subject ←→ Query26.7814
NC_015222:2475792*Nitrosomonas sp. AL212 chromosome, complete genome75.9559 %Subject ←→ Query26.7854
NC_008497:1575884*Lactobacillus brevis ATCC 367, complete genome77.3468 %Subject ←→ Query26.8361
NC_008526:2373190Lactobacillus casei ATCC 334, complete genome81.9118 %Subject ←→ Query26.8543
NC_015731:1731896Nitrosomonas sp. Is79A3 chromosome, complete genome75.3431 %Subject ←→ Query27.058
NC_010999:2516000Lactobacillus casei, complete genome83.1924 %Subject ←→ Query27.1158
NC_010999:2483000Lactobacillus casei, complete genome81.2377 %Subject ←→ Query27.2718
NC_008526:1973500Lactobacillus casei ATCC 334, complete genome80.5545 %Subject ←→ Query27.286
NC_015731:1062824*Nitrosomonas sp. Is79A3 chromosome, complete genome76.6452 %Subject ←→ Query27.365
NC_015222:523915Nitrosomonas sp. AL212 chromosome, complete genome75.7476 %Subject ←→ Query27.4514
NC_015731:2400526*Nitrosomonas sp. Is79A3 chromosome, complete genome78.7469 %Subject ←→ Query27.4684
NC_014334:1848340*Lactobacillus casei str. Zhang chromosome, complete genome85.4963 %Subject ←→ Query27.6265
NC_015222:1492500Nitrosomonas sp. AL212 chromosome, complete genome76.6146 %Subject ←→ Query27.6569
NC_015731:169989Nitrosomonas sp. Is79A3 chromosome, complete genome78.5907 %Subject ←→ Query27.6873
NC_015222:1749553*Nitrosomonas sp. AL212 chromosome, complete genome78.4099 %Subject ←→ Query27.7237
NC_015222:1905194*Nitrosomonas sp. AL212 chromosome, complete genome78.6489 %Subject ←→ Query27.742
NC_015222:1843093Nitrosomonas sp. AL212 chromosome, complete genome75.3033 %Subject ←→ Query27.7777
NC_005140:660305Vibrio vulnificus YJ016 chromosome II, complete sequence78.03 %Subject ←→ Query27.8453
NC_009800:1632585Escherichia coli HS, complete genome75.0766 %Subject ←→ Query27.8484
NC_015975:789312Lactobacillus ruminis ATCC 27782 chromosome, complete genome78.8297 %Subject ←→ Query27.8749
NC_008525:561000Pediococcus pentosaceus ATCC 25745, complete genome75.2543 %Subject ←→ Query28.0034
NC_010999:2450974*Lactobacillus casei, complete genome83.9154 %Subject ←→ Query28.2344
NC_015731:1381737Nitrosomonas sp. Is79A3 chromosome, complete genome76.8566 %Subject ←→ Query28.2344
NC_004460:81687Vibrio vulnificus CMCP6 chromosome II, complete sequence78.027 %Subject ←→ Query28.2861
CP002185:1727493Escherichia coli W, complete genome75.0153 %Subject ←→ Query28.2922
NC_013199:1150000Lactobacillus rhamnosus Lc 705, complete genome83.8572 %Subject ←→ Query28.4351
NC_015224:4101939*Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,75.0674 %Subject ←→ Query28.505
NC_009138:668000Herminiimonas arsenicoxydans, complete genome75.6005 %Subject ←→ Query28.6266
NC_013895:1086500*Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete75.9835 %Subject ←→ Query28.8667
NC_008526:74500*Lactobacillus casei ATCC 334, complete genome82.8186 %Subject ←→ Query28.9383
NC_015660:3467579*Geobacillus thermoglucosidasius C56-YS93 chromosome, complete75.3064 %Subject ←→ Query28.9622
NC_008563:1651270Escherichia coli APEC O1, complete genome75.1838 %Subject ←→ Query28.964
NC_015222:1607757Nitrosomonas sp. AL212 chromosome, complete genome78.5447 %Subject ←→ Query29.1095
NC_010159:2440947Yersinia pestis Angola, complete genome75.5178 %Subject ←→ Query29.2315
NC_015224:2095816*Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,76.9638 %Subject ←→ Query29.2437
NC_010999:1245239Lactobacillus casei, complete genome76.6636 %Subject ←→ Query29.2811
NC_014334:37040Lactobacillus casei str. Zhang chromosome, complete genome80.7721 %Subject ←→ Query29.347
CU928160:1625535Escherichia coli IAI1 chromosome, complete genome75.0153 %Subject ←→ Query29.4018
NC_004088:2691565*Yersinia pestis KIM, complete genome75.1103 %Subject ←→ Query29.4656
NC_015224:889536Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,75.2083 %Subject ←→ Query29.4777
NC_012984:520000Lactobacillus plantarum JDM1, complete genome75.6893 %Subject ←→ Query29.4929
NC_013199:2426686Lactobacillus rhamnosus Lc 705, complete genome82.8156 %Subject ←→ Query29.5122
NC_013199:1407742*Lactobacillus rhamnosus Lc 705, complete genome83.6213 %Subject ←→ Query29.5477
NC_015224:2061951*Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,75.4412 %Subject ←→ Query29.6
NC_013199:392450*Lactobacillus rhamnosus Lc 705, complete genome76.4614 %Subject ←→ Query29.6644
NC_011026:1284966*Chloroherpeton thalassium ATCC 35110, complete genome75.1777 %Subject ←→ Query29.7452
NC_014334:99000*Lactobacillus casei str. Zhang chromosome, complete genome80.8088 %Subject ←→ Query29.7551
NC_005810:1976000Yersinia pestis biovar Microtus str. 91001, complete genome75.1103 %Subject ←→ Query29.7909
NC_010999:623489Lactobacillus casei, complete genome79.5159 %Subject ←→ Query29.8391
NC_005810:4224500Yersinia pestis biovar Microtus str. 91001, complete genome75.7537 %Subject ←→ Query29.8821
NC_013198:2458080Lactobacillus rhamnosus GG, complete genome82.2426 %Subject ←→ Query29.954
NC_009052:2512373Shewanella baltica OS155, complete genome75.2911 %Subject ←→ Query30.0584
NC_004603:1519904Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete75.4749 %Subject ←→ Query30.0705
NC_003143:1880000Yersinia pestis CO92, complete genome75.1348 %Subject ←→ Query30.0766
NC_006155:713174*Yersinia pseudotuberculosis IP 32953, complete genome75.4841 %Subject ←→ Query30.0948
NC_005810:1663672*Yersinia pestis biovar Microtus str. 91001, complete genome75.2635 %Subject ←→ Query30.2138
NC_008526:506263Lactobacillus casei ATCC 334, complete genome77.932 %Subject ←→ Query30.2894
NC_008528:1265542*Oenococcus oeni PSU-1, complete genome76.5717 %Subject ←→ Query30.4449
NC_009513:169146*Lactobacillus reuteri F275, complete genome75.144 %Subject ←→ Query30.5164
NC_008526:565902Lactobacillus casei ATCC 334, complete genome76.7034 %Subject ←→ Query30.5707
NC_013199:2386924Lactobacillus rhamnosus Lc 705, complete genome83.8174 %Subject ←→ Query30.5957
NC_007946:2625461Escherichia coli UTI89, complete genome75.6893 %Subject ←→ Query30.6978
NC_013198:1030970*Lactobacillus rhamnosus GG, complete genome84.4455 %Subject ←→ Query30.8386
NC_010999:561914Lactobacillus casei, complete genome80.046 %Subject ←→ Query30.939
NC_007576:1564739*Lactobacillus sakei subsp. sakei 23K, complete genome76.492 %Subject ←→ Query31.0118
NC_015214:1458480Lactobacillus acidophilus 30SC chromosome, complete genome77.1538 %Subject ←→ Query31.0242
NC_013198:394000*Lactobacillus rhamnosus GG, complete genome81.3971 %Subject ←→ Query31.056
NC_008529:1133665Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete78.2874 %Subject ←→ Query31.098
NC_013198:511795Lactobacillus rhamnosus GG, complete genome80.1379 %Subject ←→ Query31.25
NC_005810:3272765Yersinia pestis biovar Microtus str. 91001, complete genome75.4933 %Subject ←→ Query31.3564
NC_015731:447411Nitrosomonas sp. Is79A3 chromosome, complete genome75.3125 %Subject ←→ Query31.3594
NC_015428:1668465*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome80.2083 %Subject ←→ Query31.3716
NC_010999:1381497*Lactobacillus casei, complete genome83.1311 %Subject ←→ Query31.3851
NC_015224:3892972*Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,76.2561 %Subject ←→ Query31.393
NC_016023:1959255Bacillus coagulans 36D1 chromosome, complete genome75.2849 %Subject ←→ Query31.4721
NC_013198:36829Lactobacillus rhamnosus GG, complete genome81.6238 %Subject ←→ Query31.5674
NC_015602:1949610Lactobacillus kefiranofaciens ZW3 chromosome, complete genome81.2745 %Subject ←→ Query31.6209
NC_008054:1117703*Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete76.3971 %Subject ←→ Query31.8215
NC_010999:2155714Lactobacillus casei, complete genome80.3401 %Subject ←→ Query31.9385
NC_007576:299266*Lactobacillus sakei subsp. sakei 23K, complete genome75.6066 %Subject ←→ Query32.1055
NC_014727:889132Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,77.1661 %Subject ←→ Query32.2258
NC_013198:1095591Lactobacillus rhamnosus GG, complete genome80.8487 %Subject ←→ Query32.5093
NC_008150:1705152*Yersinia pestis Antiqua, complete genome75.0766 %Subject ←→ Query32.6597
NC_014334:589526Lactobacillus casei str. Zhang chromosome, complete genome81.3205 %Subject ←→ Query32.7578
NC_008577:4183361Shewanella sp. ANA-3 chromosome 1, complete sequence76.4553 %Subject ←→ Query32.7699
NC_013895:605488*Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete75.4596 %Subject ←→ Query32.8408
NC_010999:252605Lactobacillus casei, complete genome77.4387 %Subject ←→ Query32.847
NC_008526:1924761Lactobacillus casei ATCC 334, complete genome75.9865 %Subject ←→ Query32.8703
NC_015572:2186394Methylomonas methanica MC09 chromosome, complete genome75.6985 %Subject ←→ Query33.1331
NC_008150:844727Yersinia pestis Antiqua, complete genome75.0582 %Subject ←→ Query33.1448
NC_014334:1954333Lactobacillus casei str. Zhang chromosome, complete genome78.7531 %Subject ←→ Query33.3293
NC_015581:680460Thioalkalimicrobium cyclicum ALM1 chromosome, complete genome75.049 %Subject ←→ Query33.4619
NC_013198:1538792*Lactobacillus rhamnosus GG, complete genome78.6121 %Subject ←→ Query33.5442
NC_011026:2269986*Chloroherpeton thalassium ATCC 35110, complete genome77.1293 %Subject ←→ Query33.5605
NC_013199:2058857*Lactobacillus rhamnosus Lc 705, complete genome82.9688 %Subject ←→ Query33.7873
NC_013199:845000Lactobacillus rhamnosus Lc 705, complete genome78.462 %Subject ←→ Query33.8589
NC_015572:1Methylomonas methanica MC09 chromosome, complete genome81.0999 %Subject ←→ Query34.0009
NC_013166:82986Kangiella koreensis DSM 16069, complete genome76.9118 %Subject ←→ Query34.1481
NC_015731:2950874*Nitrosomonas sp. Is79A3 chromosome, complete genome75.4105 %Subject ←→ Query34.276
NC_008054:201075*Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete75.9467 %Subject ←→ Query34.2781
NC_011748:2655989*Escherichia coli 55989, complete genome75.864 %Subject ←→ Query34.5105
CU928145:2655989*Escherichia coli 55989 chromosome, complete genome75.864 %Subject ←→ Query34.5105
NC_015731:3658956*Nitrosomonas sp. Is79A3 chromosome, complete genome77.2518 %Subject ←→ Query34.5275
NC_008526:250000*Lactobacillus casei ATCC 334, complete genome77.4112 %Subject ←→ Query35.0097
NC_013198:2088780*Lactobacillus rhamnosus GG, complete genome81.4032 %Subject ←→ Query35.0489
NC_015634:959396Bacillus coagulans 2-6 chromosome, complete genome76.5288 %Subject ←→ Query35.0988
NC_014334:267409*Lactobacillus casei str. Zhang chromosome, complete genome78.4375 %Subject ←→ Query35.3356
NC_010554:2646806Proteus mirabilis HI4320, complete genome77.1906 %Subject ←→ Query35.3988
NC_008526:1822000*Lactobacillus casei ATCC 334, complete genome79.0748 %Subject ←→ Query35.8686
NC_015634:2595500Bacillus coagulans 2-6 chromosome, complete genome75.5086 %Subject ←→ Query35.9909
NC_010999:1979989*Lactobacillus casei, complete genome78.704 %Subject ←→ Query36.6636
NC_010995:4525119Cellvibrio japonicus Ueda107, complete genome76.9087 %Subject ←→ Query36.7553
NC_010610:861194Lactobacillus fermentum IFO 3956, complete genome78.0208 %Subject ←→ Query36.7806
NC_012691:779826*Tolumonas auensis DSM 9187, complete genome76.3358 %Subject ←→ Query36.9103
NC_014334:1775781*Lactobacillus casei str. Zhang chromosome, complete genome79.4945 %Subject ←→ Query36.9239
NC_014010:1850500Candidatus Puniceispirillum marinum IMCC1322 chromosome, complete76.1152 %Subject ←→ Query36.9283
NC_015572:4916430Methylomonas methanica MC09 chromosome, complete genome78.1618 %Subject ←→ Query37.6362
NC_013730:2359939Spirosoma linguale DSM 74, complete genome75.2757 %Subject ←→ Query38.4788
NC_012691:2146473Tolumonas auensis DSM 9187, complete genome75.6464 %Subject ←→ Query38.7833
NC_000913:2092559Escherichia coli K12, complete genome75.4167 %Subject ←→ Query39.0792
NC_014334:769205*Lactobacillus casei str. Zhang chromosome, complete genome77.7237 %Subject ←→ Query39.1896
NC_010610:755000*Lactobacillus fermentum IFO 3956, complete genome76.0631 %Subject ←→ Query39.2062
NC_010473:2183567Escherichia coli str. K-12 substr. DH10B, complete genome75.4013 %Subject ←→ Query39.4035
CU928160:1978500*Escherichia coli IAI1 chromosome, complete genome75.6373 %Subject ←→ Query39.8184
NC_011750:4490573Escherichia coli IAI39 chromosome, complete genome75.0306 %Subject ←→ Query39.857
NC_009801:1392696Escherichia coli E24377A, complete genome75.2053 %Subject ←→ Query40.1617
NC_010498:1035406Escherichia coli SMS-3-5, complete genome75.0337 %Subject ←→ Query40.4468
NC_004337:2098736Shigella flexneri 2a str. 301, complete genome75.481 %Subject ←→ Query40.5505
NC_007606:1999870Shigella dysenteriae Sd197, complete genome75.3156 %Subject ←→ Query40.5837
NC_012691:3126500Tolumonas auensis DSM 9187, complete genome75.0398 %Subject ←→ Query40.5946
NC_004741:2081649Shigella flexneri 2a str. 2457T, complete genome75.3493 %Subject ←→ Query40.989
NC_007946:2231872Escherichia coli UTI89, complete genome75.7843 %Subject ←→ Query41.7368
NC_011750:1034919Escherichia coli IAI39 chromosome, complete genome76.8995 %Subject ←→ Query41.8819
NC_009801:2276131Escherichia coli E24377A, complete genome75.0705 %Subject Query42.0348
NC_015567:1660462Serratia sp. AS9 chromosome, complete genome75.9283 %Subject Query42.6158
CU928160:4570498*Escherichia coli IAI1 chromosome, complete genome75.239 %Subject Query43.1129
NC_010468:1775000Escherichia coli ATCC 8739, complete genome75.7659 %Subject Query43.1492
NC_015214:1853106Lactobacillus acidophilus 30SC chromosome, complete genome77.0619 %Subject Query43.7956
NC_002655:2839600Escherichia coli O157:H7 EDL933, complete genome76.2806 %Subject Query43.9163
AP010958:2504072Escherichia coli O103:H2 str. 12009 DNA, complete genome75.5178 %Subject Query44.3006
NC_011748:2324495Escherichia coli 55989, complete genome75.3922 %Subject Query44.5493
CU928145:2324495Escherichia coli 55989 chromosome, complete genome75.3922 %Subject Query44.5493
NC_015566:1659288Serratia sp. AS12 chromosome, complete genome76.2102 %Subject Query44.7005
NC_010610:795975Lactobacillus fermentum IFO 3956, complete genome76.1244 %Subject Query44.835
NC_002695:2769387Escherichia coli O157:H7 str. Sakai, complete genome76.2224 %Subject Query45.1761
NC_009800:2156091Escherichia coli HS, complete genome75.8548 %Subject Query45.7523
NC_015663:3466471*Enterobacter aerogenes KCTC 2190 chromosome, complete genome75.4688 %Subject Query46.0588
NC_008573:195317Shewanella sp. ANA-3 plasmid 1, complete sequence75.1532 %Subject Query46.5154
NC_010611:240839Acinetobacter baumannii ACICU, complete genome78.0362 %Subject Query48.2217
NC_012880:3421500*Dickeya dadantii Ech703, complete genome75.7751 %Subject Query54.2571