Pre_GI: OUP Neighbours

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Query: NC_013199:1886271 Lactobacillus rhamnosus Lc 705, complete genome

D: 35.0179

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.

Number of Neighbours: 33




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_007520:2391675Thiomicrospira crunogena XCL-2, complete genome77.2059 %Subject ←→ Query26.1369
NC_008497:556365*Lactobacillus brevis ATCC 367, complete genome76.7708 %Subject ←→ Query27.4289
NC_008497:447427*Lactobacillus brevis ATCC 367, complete genome76.2806 %Subject ←→ Query27.6386
NC_015731:169989Nitrosomonas sp. Is79A3 chromosome, complete genome75.4136 %Subject ←→ Query27.6873
NC_009052:144619*Shewanella baltica OS155, complete genome75.5392 %Subject ←→ Query27.7085
NC_015222:1749553*Nitrosomonas sp. AL212 chromosome, complete genome75.5974 %Subject ←→ Query27.7237
NC_008526:74500*Lactobacillus casei ATCC 334, complete genome79.2616 %Subject ←→ Query28.9383
NC_015428:2291430*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome77.693 %Subject ←→ Query30.5599
NC_007520:1940120*Thiomicrospira crunogena XCL-2, complete genome78.6918 %Subject ←→ Query31.019
NC_007576:1854136*Lactobacillus sakei subsp. sakei 23K, complete genome76.2377 %Subject ←→ Query31.3415
NC_007520:2128178*Thiomicrospira crunogena XCL-2, complete genome78.1066 %Subject ←→ Query31.6498
NC_007576:1747662*Lactobacillus sakei subsp. sakei 23K, complete genome76.9056 %Subject ←→ Query32.1833
NC_015975:441580*Lactobacillus ruminis ATCC 27782 chromosome, complete genome75.8303 %Subject ←→ Query32.2212
NC_012880:3915500*Dickeya dadantii Ech703, complete genome75.7598 %Subject ←→ Query32.55
NC_014334:589526Lactobacillus casei str. Zhang chromosome, complete genome76.5931 %Subject ←→ Query32.7578
NC_013198:1921500*Lactobacillus rhamnosus GG, complete genome93.4406 %Subject ←→ Query33.277
NC_013198:298000*Lactobacillus rhamnosus GG, complete genome84.8621 %Subject ←→ Query33.8795
NC_015572:1Methylomonas methanica MC09 chromosome, complete genome77.9749 %Subject ←→ Query34.0009
NC_015572:1421782Methylomonas methanica MC09 chromosome, complete genome77.0527 %Subject ←→ Query34.0502
NC_015581:128350*Thioalkalimicrobium cyclicum ALM1 chromosome, complete genome76.633 %Subject ←→ Query34.2108
NC_013199:282901*Lactobacillus rhamnosus Lc 705, complete genome82.2028 %Subject ←→ Query34.5452
NC_010554:2646806Proteus mirabilis HI4320, complete genome75.625 %Subject ←→ Query35.3988
NC_008497:1498430*Lactobacillus brevis ATCC 367, complete genome75.7292 %Subject ←→ Query35.4937
NC_008526:817628*Lactobacillus casei ATCC 334, complete genome81.2316 %Subject ←→ Query36.4528
NC_008526:2489196*Lactobacillus casei ATCC 334, complete genome75.72 %Subject ←→ Query36.8865
NC_015428:823420*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome77.742 %Subject ←→ Query37.54
NC_013199:2536705*Lactobacillus rhamnosus Lc 705, complete genome79.8529 %Subject ←→ Query37.5527
NC_015572:4916430Methylomonas methanica MC09 chromosome, complete genome77.9626 %Subject ←→ Query37.6362
NC_013198:813830*Lactobacillus rhamnosus GG, complete genome83.2567 %Subject ←→ Query37.9547
NC_015428:700479*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome78.9614 %Subject ←→ Query38.8838
NC_013199:811929*Lactobacillus rhamnosus Lc 705, complete genome83.9185 %Subject ←→ Query39.2072
NC_015572:4209000*Methylomonas methanica MC09 chromosome, complete genome76.4093 %Subject ←→ Query40.0218
NC_010999:880878*Lactobacillus casei, complete genome80.0245 %Subject ←→ Query40.5776