Pre_GI: OUP Neighbours

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Query: NC_013199:1407742 Lactobacillus rhamnosus Lc 705, complete genome

D: 29.5477

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.

Number of Neighbours: 82




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_015697:116000*Lactobacillus reuteri SD2112 chromosome, complete genome75.2727 %Subject ←→ Query22.793
NC_006300:1624254*Mannheimia succiniciproducens MBEL55E, complete genome75.864 %Subject ←→ Query23.223
NC_015697:256000*Lactobacillus reuteri SD2112 chromosome, complete genome75.8578 %Subject ←→ Query23.2612
NC_014334:1039248Lactobacillus casei str. Zhang chromosome, complete genome79.617 %Subject ←→ Query24.0151
NC_014334:2696000Lactobacillus casei str. Zhang chromosome, complete genome80.0613 %Subject ←→ Query25.2128
NC_014334:2307950Lactobacillus casei str. Zhang chromosome, complete genome78.3119 %Subject ←→ Query25.5593
NC_010999:349252Lactobacillus casei, complete genome77.1936 %Subject ←→ Query25.611
NC_010080:1885677Lactobacillus helveticus DPC 4571, complete genome78.6366 %Subject ←→ Query25.9241
NC_010080:1911932Lactobacillus helveticus DPC 4571, complete genome76.5288 %Subject ←→ Query25.9336
NC_014334:369974Lactobacillus casei str. Zhang chromosome, complete genome80.1501 %Subject ←→ Query26.4531
NC_010999:2059738Lactobacillus casei, complete genome76.3174 %Subject ←→ Query26.5655
NC_012913:280506Aggregatibacter aphrophilus NJ8700, complete genome77.3284 %Subject ←→ Query26.6691
NC_015428:1483768Lactobacillus buchneri NRRL B-30929 chromosome, complete genome75.4749 %Subject ←→ Query26.7814
NC_015222:2475792*Nitrosomonas sp. AL212 chromosome, complete genome75.1532 %Subject ←→ Query26.7854
NC_008497:1575884*Lactobacillus brevis ATCC 367, complete genome77.4326 %Subject ←→ Query26.8361
NC_008526:2373190Lactobacillus casei ATCC 334, complete genome79.9816 %Subject ←→ Query26.8543
NC_010999:2516000Lactobacillus casei, complete genome80.4718 %Subject ←→ Query27.1158
NC_010999:2483000Lactobacillus casei, complete genome80.6373 %Subject ←→ Query27.2718
NC_008526:1973500Lactobacillus casei ATCC 334, complete genome78.0729 %Subject ←→ Query27.286
NC_015731:2400526*Nitrosomonas sp. Is79A3 chromosome, complete genome78.6489 %Subject ←→ Query27.4684
NC_015222:1492500Nitrosomonas sp. AL212 chromosome, complete genome75.1011 %Subject ←→ Query27.6569
NC_015222:1749553*Nitrosomonas sp. AL212 chromosome, complete genome78.2996 %Subject ←→ Query27.7237
NC_015222:1905194*Nitrosomonas sp. AL212 chromosome, complete genome78.1281 %Subject ←→ Query27.742
NC_005140:660305Vibrio vulnificus YJ016 chromosome II, complete sequence75.9589 %Subject ←→ Query27.8453
NC_015975:789312Lactobacillus ruminis ATCC 27782 chromosome, complete genome79.4179 %Subject ←→ Query27.8749
NC_015731:1381737Nitrosomonas sp. Is79A3 chromosome, complete genome75.5576 %Subject ←→ Query28.2344
NC_010999:2450974*Lactobacillus casei, complete genome82.1324 %Subject ←→ Query28.2344
NC_004460:81687Vibrio vulnificus CMCP6 chromosome II, complete sequence76.1152 %Subject ←→ Query28.2861
NC_013199:1150000Lactobacillus rhamnosus Lc 705, complete genome83.0055 %Subject ←→ Query28.4351
NC_013895:1282566*Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete76.1366 %Subject ←→ Query28.6033
NC_013895:1086500*Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete76.4491 %Subject ←→ Query28.8667
NC_008526:74500*Lactobacillus casei ATCC 334, complete genome80.5086 %Subject ←→ Query28.9383
NC_015660:3467579*Geobacillus thermoglucosidasius C56-YS93 chromosome, complete75.1532 %Subject ←→ Query28.9622
NC_015222:1607757Nitrosomonas sp. AL212 chromosome, complete genome76.9271 %Subject ←→ Query29.1095
NC_010999:1245239Lactobacillus casei, complete genome75.671 %Subject ←→ Query29.2811
NC_014334:37040Lactobacillus casei str. Zhang chromosome, complete genome78.6336 %Subject ←→ Query29.347
NC_012984:520000Lactobacillus plantarum JDM1, complete genome75.8119 %Subject ←→ Query29.4929
NC_013199:2426686Lactobacillus rhamnosus Lc 705, complete genome83.7286 %Subject ←→ Query29.5122
NC_013199:392450*Lactobacillus rhamnosus Lc 705, complete genome75.6893 %Subject ←→ Query29.6644
NC_010999:623489Lactobacillus casei, complete genome77.3162 %Subject ←→ Query29.8391
NC_013198:2458080Lactobacillus rhamnosus GG, complete genome82.8922 %Subject ←→ Query29.954
NC_008526:506263Lactobacillus casei ATCC 334, complete genome77.1722 %Subject ←→ Query30.2894
NC_015975:752927*Lactobacillus ruminis ATCC 27782 chromosome, complete genome75.2512 %Subject ←→ Query30.478
NC_009513:169146*Lactobacillus reuteri F275, complete genome75.4381 %Subject ←→ Query30.5164
NC_013199:2386924Lactobacillus rhamnosus Lc 705, complete genome86.1581 %Subject ←→ Query30.5957
NC_013198:1030970*Lactobacillus rhamnosus GG, complete genome84.8009 %Subject ←→ Query30.8386
NC_010999:561914Lactobacillus casei, complete genome78.5325 %Subject ←→ Query30.939
NC_007576:1564739*Lactobacillus sakei subsp. sakei 23K, complete genome76.8474 %Subject ←→ Query31.0118
NC_015214:1458480Lactobacillus acidophilus 30SC chromosome, complete genome76.0447 %Subject ←→ Query31.0242
NC_013198:394000*Lactobacillus rhamnosus GG, complete genome77.9779 %Subject ←→ Query31.056
NC_008529:1133665Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete76.6575 %Subject ←→ Query31.098
NC_015428:1668465*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome76.4093 %Subject ←→ Query31.3716
NC_010999:1381497*Lactobacillus casei, complete genome80.6985 %Subject ←→ Query31.3851
NC_013198:36829Lactobacillus rhamnosus GG, complete genome80.5576 %Subject ←→ Query31.5674
NC_015602:1949610Lactobacillus kefiranofaciens ZW3 chromosome, complete genome78.3149 %Subject ←→ Query31.6209
NC_008054:1117703*Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete75.6373 %Subject ←→ Query31.8215
NC_004668:3184319*Enterococcus faecalis V583, complete genome75.1379 %Subject ←→ Query31.8458
NC_010999:2155714Lactobacillus casei, complete genome78.508 %Subject ←→ Query31.9385
NC_013199:1966334*Lactobacillus rhamnosus Lc 705, complete genome83.6213 %Subject ←→ Query31.9404
NC_007576:299266*Lactobacillus sakei subsp. sakei 23K, complete genome75.2757 %Subject ←→ Query32.1055
NC_014727:889132Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,76.5594 %Subject ←→ Query32.2258
NC_013198:1095591Lactobacillus rhamnosus GG, complete genome79.6783 %Subject ←→ Query32.5093
NC_014551:865254Bacillus amyloliquefaciens DSM 7, complete genome75.5239 %Subject ←→ Query32.6062
NC_013895:605488*Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete76.299 %Subject ←→ Query32.8408
NC_014334:1954333Lactobacillus casei str. Zhang chromosome, complete genome77.8094 %Subject ←→ Query33.3293
NC_015581:680460Thioalkalimicrobium cyclicum ALM1 chromosome, complete genome76.0662 %Subject ←→ Query33.4619
NC_013198:1538792*Lactobacillus rhamnosus GG, complete genome76.9393 %Subject ←→ Query33.5442
NC_011026:2269986*Chloroherpeton thalassium ATCC 35110, complete genome76.9455 %Subject ←→ Query33.5605
NC_013199:2058857*Lactobacillus rhamnosus Lc 705, complete genome82.4724 %Subject ←→ Query33.7873
NC_013199:845000Lactobacillus rhamnosus Lc 705, complete genome78.8603 %Subject ←→ Query33.8589
NC_015572:1Methylomonas methanica MC09 chromosome, complete genome82.1844 %Subject ←→ Query34.0009
NC_013166:82986Kangiella koreensis DSM 16069, complete genome76.25 %Subject ←→ Query34.1481
NC_008054:201075*Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete76.008 %Subject ←→ Query34.2781
NC_013198:2088780*Lactobacillus rhamnosus GG, complete genome80.8395 %Subject ←→ Query35.0489
NC_015634:959396Bacillus coagulans 2-6 chromosome, complete genome76.2163 %Subject ←→ Query35.0988
NC_006322:1119471Bacillus licheniformis ATCC 14580, complete genome75.1501 %Subject ←→ Query36.4447
NC_010610:861194Lactobacillus fermentum IFO 3956, complete genome77.2243 %Subject ←→ Query36.7806
NC_010468:1775000Escherichia coli ATCC 8739, complete genome75.0368 %Subject Query43.1492
NC_015214:1853106Lactobacillus acidophilus 30SC chromosome, complete genome76.5227 %Subject Query43.7956
NC_002655:2839600Escherichia coli O157:H7 EDL933, complete genome75.4963 %Subject Query43.9163
NC_015566:1659288Serratia sp. AS12 chromosome, complete genome75.1685 %Subject Query44.7005
NC_002695:2769387Escherichia coli O157:H7 str. Sakai, complete genome75.4688 %Subject Query45.1761