Pre_GI: OUP Neighbours

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Query: NC_013198:1095591 Lactobacillus rhamnosus GG, complete genome

D: 32.5093

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.

Number of Neighbours: 101




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_014136:329484Leuconostoc kimchii IMSNU11154 chromosome, complete genome75.9222 %Subject Query20.2253
NC_015930:821342Lactococcus garvieae ATCC 49156, complete genome75.5668 %Subject Query20.8694
NC_015391:504227Carnobacterium sp. 17-4 chromosome, complete genome75.1654 %Subject Query22.3067
NC_015428:193817Lactobacillus buchneri NRRL B-30929 chromosome, complete genome76.8229 %Subject ←→ Query22.7687
NC_015697:256000*Lactobacillus reuteri SD2112 chromosome, complete genome76.9577 %Subject ←→ Query23.2612
NC_009848:2335265Bacillus pumilus SAFR-032, complete genome75.1287 %Subject ←→ Query23.4436
NC_013791:1323903Bacillus pseudofirmus OF4 chromosome, complete genome75.7996 %Subject ←→ Query23.6967
NC_014334:1039248Lactobacillus casei str. Zhang chromosome, complete genome79.8652 %Subject ←→ Query24.0151
NC_014334:2696000Lactobacillus casei str. Zhang chromosome, complete genome81.0754 %Subject ←→ Query25.2128
NC_009848:3631243Bacillus pumilus SAFR-032, complete genome75.674 %Subject ←→ Query25.4153
NC_014334:2307950Lactobacillus casei str. Zhang chromosome, complete genome79.8346 %Subject ←→ Query25.5593
NC_010999:349252Lactobacillus casei, complete genome79.3413 %Subject ←→ Query25.611
NC_009848:354202*Bacillus pumilus SAFR-032, complete genome76.8995 %Subject ←→ Query25.7688
NC_010080:1885677Lactobacillus helveticus DPC 4571, complete genome78.2169 %Subject ←→ Query25.9241
NC_010080:1911932Lactobacillus helveticus DPC 4571, complete genome78.652 %Subject ←→ Query25.9336
NC_014334:369974Lactobacillus casei str. Zhang chromosome, complete genome82.4265 %Subject ←→ Query26.4531
NC_010999:2059738Lactobacillus casei, complete genome80.481 %Subject ←→ Query26.5655
NC_014724:1101950Lactobacillus amylovorus GRL 1112 chromosome, complete genome76.9669 %Subject ←→ Query26.6698
NC_015428:1483768Lactobacillus buchneri NRRL B-30929 chromosome, complete genome79.614 %Subject ←→ Query26.7814
NC_008497:1575884*Lactobacillus brevis ATCC 367, complete genome75.1256 %Subject ←→ Query26.8361
NC_008526:2373190Lactobacillus casei ATCC 334, complete genome79.758 %Subject ←→ Query26.8543
NC_015975:1593797Lactobacillus ruminis ATCC 27782 chromosome, complete genome76.538 %Subject ←→ Query26.9455
NC_013166:194614*Kangiella koreensis DSM 16069, complete genome76.2224 %Subject ←→ Query27.042
NC_010999:2516000Lactobacillus casei, complete genome79.6109 %Subject ←→ Query27.1158
NC_010999:2483000Lactobacillus casei, complete genome79.2433 %Subject ←→ Query27.2718
NC_008526:1973500Lactobacillus casei ATCC 334, complete genome77.7267 %Subject ←→ Query27.286
NC_015731:2400526*Nitrosomonas sp. Is79A3 chromosome, complete genome75.3248 %Subject ←→ Query27.4684
NC_014479:3825195*Bacillus subtilis subsp. spizizenii str. W23 chromosome, complete76.7249 %Subject ←→ Query27.6174
NC_015222:94847Nitrosomonas sp. AL212 chromosome, complete genome75.9222 %Subject ←→ Query27.6612
NC_015222:1749553*Nitrosomonas sp. AL212 chromosome, complete genome76.8689 %Subject ←→ Query27.7237
NC_015222:1905194*Nitrosomonas sp. AL212 chromosome, complete genome75.7047 %Subject ←→ Query27.742
NC_005140:660305Vibrio vulnificus YJ016 chromosome II, complete sequence78.2353 %Subject ←→ Query27.8453
NC_015975:789312Lactobacillus ruminis ATCC 27782 chromosome, complete genome78.3793 %Subject ←→ Query27.8749
NC_015975:558523*Lactobacillus ruminis ATCC 27782 chromosome, complete genome76.5931 %Subject ←→ Query28.1514
NC_010999:2450974*Lactobacillus casei, complete genome82.019 %Subject ←→ Query28.2344
NC_004460:81687Vibrio vulnificus CMCP6 chromosome II, complete sequence78.4651 %Subject ←→ Query28.2861
NC_008497:1111891*Lactobacillus brevis ATCC 367, complete genome76.6207 %Subject ←→ Query28.4188
NC_013199:1150000Lactobacillus rhamnosus Lc 705, complete genome78.7561 %Subject ←→ Query28.4351
NC_013895:1086500*Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete75.3738 %Subject ←→ Query28.8667
NC_008526:74500*Lactobacillus casei ATCC 334, complete genome80.4442 %Subject ←→ Query28.9383
NC_015222:1607757Nitrosomonas sp. AL212 chromosome, complete genome76.0968 %Subject ←→ Query29.1095
NC_010999:1245239Lactobacillus casei, complete genome83.0208 %Subject ←→ Query29.2811
NC_009783:1956000Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequence76.1305 %Subject ←→ Query29.2954
NC_000964:2670288Bacillus subtilis subsp. subtilis str. 168, complete genome75.4994 %Subject ←→ Query29.3065
NC_014334:37040Lactobacillus casei str. Zhang chromosome, complete genome80.2359 %Subject ←→ Query29.347
NC_012984:520000Lactobacillus plantarum JDM1, complete genome75.8027 %Subject ←→ Query29.4929
NC_013199:2426686Lactobacillus rhamnosus Lc 705, complete genome76.3051 %Subject ←→ Query29.5122
NC_013199:1407742*Lactobacillus rhamnosus Lc 705, complete genome79.6783 %Subject ←→ Query29.5477
NC_013199:392450*Lactobacillus rhamnosus Lc 705, complete genome78.6336 %Subject ←→ Query29.6644
NC_010999:623489Lactobacillus casei, complete genome77.2947 %Subject ←→ Query29.8391
NC_013198:2458080Lactobacillus rhamnosus GG, complete genome77.3805 %Subject ←→ Query29.954
NC_008526:506263Lactobacillus casei ATCC 334, complete genome86.2745 %Subject ←→ Query30.2894
NC_015975:752927*Lactobacillus ruminis ATCC 27782 chromosome, complete genome76.97 %Subject ←→ Query30.478
NC_013199:2386924Lactobacillus rhamnosus Lc 705, complete genome78.3119 %Subject ←→ Query30.5957
NC_013198:1030970*Lactobacillus rhamnosus GG, complete genome77.6409 %Subject ←→ Query30.8386
NC_010999:561914Lactobacillus casei, complete genome87.2855 %Subject ←→ Query30.939
NC_007576:1564739*Lactobacillus sakei subsp. sakei 23K, complete genome75.5024 %Subject ←→ Query31.0118
NC_015214:1458480Lactobacillus acidophilus 30SC chromosome, complete genome80.288 %Subject ←→ Query31.0242
NC_013198:394000*Lactobacillus rhamnosus GG, complete genome80.8793 %Subject ←→ Query31.056
NC_008322:2077628*Shewanella sp. MR-7, complete genome75.9222 %Subject ←→ Query31.0943
NC_008529:1133665Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete77.1324 %Subject ←→ Query31.098
NC_015428:1668465*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome75.3891 %Subject ←→ Query31.3716
NC_010999:1381497*Lactobacillus casei, complete genome81.3572 %Subject ←→ Query31.3851
NC_016023:1959255Bacillus coagulans 36D1 chromosome, complete genome76.2439 %Subject ←→ Query31.4721
NC_013198:36829Lactobacillus rhamnosus GG, complete genome78.2077 %Subject ←→ Query31.5674
NC_015602:1949610Lactobacillus kefiranofaciens ZW3 chromosome, complete genome77.7849 %Subject ←→ Query31.6209
NC_015731:313676Nitrosomonas sp. Is79A3 chromosome, complete genome75.2175 %Subject ←→ Query31.7675
NC_008054:1117703*Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete77.0129 %Subject ←→ Query31.8215
NC_004668:3184319*Enterococcus faecalis V583, complete genome75.2451 %Subject ←→ Query31.8458
NC_010999:2155714Lactobacillus casei, complete genome79.0074 %Subject ←→ Query31.9385
NC_013199:1966334*Lactobacillus rhamnosus Lc 705, complete genome80.8487 %Subject ←→ Query31.9404
NC_014727:889132Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,77.6042 %Subject ←→ Query32.2258
NC_006582:4256915*Bacillus clausii KSM-K16, complete genome75.2543 %Subject ←→ Query32.4815
NC_008526:1924761Lactobacillus casei ATCC 334, complete genome86.4062 %Subject ←→ Query32.8703
NC_014334:1954333Lactobacillus casei str. Zhang chromosome, complete genome78.9706 %Subject ←→ Query33.3293
NC_009848:775000Bacillus pumilus SAFR-032, complete genome75.2482 %Subject ←→ Query33.412
NC_013198:1538792*Lactobacillus rhamnosus GG, complete genome80.3799 %Subject ←→ Query33.5442
NC_011026:2269986*Chloroherpeton thalassium ATCC 35110, complete genome75.6373 %Subject ←→ Query33.5605
NC_016047:2480921Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, complete75.2114 %Subject ←→ Query33.5684
NC_013199:2058857*Lactobacillus rhamnosus Lc 705, complete genome79.614 %Subject ←→ Query33.7873
NC_013199:845000Lactobacillus rhamnosus Lc 705, complete genome87.4357 %Subject ←→ Query33.8589
NC_015572:1Methylomonas methanica MC09 chromosome, complete genome78.3088 %Subject ←→ Query34.0009
NC_002505:1931750Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete75.2512 %Subject ←→ Query34.0291
NC_013166:82986Kangiella koreensis DSM 16069, complete genome75.3585 %Subject ←→ Query34.1481
NC_006322:3418268Bacillus licheniformis ATCC 14580, complete genome75.9528 %Subject ←→ Query34.2705
NC_008054:201075*Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete76.6789 %Subject ←→ Query34.2781
NC_014727:1220869Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,75.864 %Subject ←→ Query34.3211
NC_015975:1056731*Lactobacillus ruminis ATCC 27782 chromosome, complete genome76.4308 %Subject ←→ Query34.5635
NC_008322:1186000*Shewanella sp. MR-7, complete genome76.6115 %Subject ←→ Query34.6086
NC_008577:2402165Shewanella sp. ANA-3 chromosome 1, complete sequence75.1808 %Subject ←→ Query34.8689
NC_013198:2088780*Lactobacillus rhamnosus GG, complete genome78.3058 %Subject ←→ Query35.0489
NC_002505:1892430*Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete77.742 %Subject ←→ Query35.2857
NC_008529:1042220*Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete77.2335 %Subject ←→ Query35.6044
NC_008054:1030994*Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete75.3125 %Subject ←→ Query35.8928
NC_012691:2097287*Tolumonas auensis DSM 9187, complete genome76.4216 %Subject ←→ Query35.9123
NC_015634:2595500Bacillus coagulans 2-6 chromosome, complete genome76.4062 %Subject ←→ Query35.9909
NC_014010:1850500Candidatus Puniceispirillum marinum IMCC1322 chromosome, complete75.5852 %Subject ←→ Query36.9283
NC_002488:1775629*Xylella fastidiosa 9a5c, complete genome76.0938 %Subject ←→ Query38.0504
NC_010610:755000*Lactobacillus fermentum IFO 3956, complete genome75.1716 %Subject ←→ Query39.2062
NC_015214:1853106Lactobacillus acidophilus 30SC chromosome, complete genome77.0895 %Subject Query43.7956
NC_010610:795975Lactobacillus fermentum IFO 3956, complete genome75.098 %Subject Query44.835