Pre_GI: OUP Neighbours

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Query: NC_012962:1068102 Photorhabdus asymbiotica, complete genome

D: 41.3808

Host Lineage: Photorhabdus asymbiotica; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a North American clinical isolate from human blood. Photorhabdus asymbiota, formerly Xenorhabdus luminescens, has been isolated from human wound and blood infections often in association with spider bites. This species can also be isolated from the entomopathogenic nematode Heterorhabditis indica. Photorhabdus asymbiota is divided into two subspecies, subsp. australis which contains the Australian clinical isolates and subsp. asymbiota which contains the North American isolates. Photorhabdus is currently subdivided into three species, luminescens, temperate and asymbiotica all of which have been isolated as symbionts of heterorhabditid nematodes. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype.

Number of Neighbours: 142




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_012962:3463644Photorhabdus asymbiotica, complete genome88.3303 %Subject ←→ Query39.6218
CP002185:3964500Escherichia coli W, complete genome81.4338 %Subject ←→ Query35.0255
NC_011748:4131924Escherichia coli 55989, complete genome81.201 %Subject ←→ Query33.3341
CU928145:4131924Escherichia coli 55989 chromosome, complete genome81.201 %Subject ←→ Query33.3341
NC_009801:4073968Escherichia coli E24377A, complete genome80.8946 %Subject ←→ Query33.1357
NC_005126:1613818Photorhabdus luminescens subsp. laumondii TTO1, complete genome80.5239 %Subject ←→ Query42.1275
CP002516:119935*Escherichia coli KO11, complete genome79.5895 %Subject ←→ Query35.5119
NC_014228:3534378Xenorhabdus nematophila ATCC 19061, complete genome78.7132 %Subject ←→ Query37.5253
NC_010468:111504*Escherichia coli ATCC 8739, complete genome78.2598 %Subject Query30.4353
NC_013716:3109700Citrobacter rodentium ICC168, complete genome78.1832 %Subject ←→ Query38.7703
NC_013592:2703327Dickeya dadantii Ech586, complete genome78.0423 %Subject ←→ Query31.8627
NC_012962:1317602Photorhabdus asymbiotica, complete genome77.9779 %Subject ←→ Query33.955
NC_004088:2966331Yersinia pestis KIM, complete genome77.8156 %Subject ←→ Query32.8684
NC_011149:1077589Salmonella enterica subsp. enterica serovar Agona str. SL483,77.7482 %Subject ←→ Query33.7457
NC_015566:1206500*Serratia sp. AS12 chromosome, complete genome77.6348 %Subject ←→ Query44.1744
NC_015567:1206727*Serratia sp. AS9 chromosome, complete genome77.6011 %Subject ←→ Query42.8728
AP010958:4707712*Escherichia coli O103:H2 str. 12009 DNA, complete genome77.5827 %Subject ←→ Query32.9706
NC_014500:2019113Dickeya dadantii 3937 chromosome, complete genome77.5797 %Subject ←→ Query42.6325
NC_006155:4210606Yersinia pseudotuberculosis IP 32953, complete genome77.5521 %Subject ←→ Query31.6963
NC_015663:1869000Enterobacter aerogenes KCTC 2190 chromosome, complete genome77.4326 %Subject ←→ Query38.3683
NC_003198:4676536*Salmonella enterica subsp. enterica serovar Typhi str. CT18,77.4234 %Subject ←→ Query35.7447
NC_012214:474359*Erwinia pyrifoliae Ep1/96, complete genome77.2365 %Subject ←→ Query32.755
NC_014228:3353896Xenorhabdus nematophila ATCC 19061, complete genome77.1906 %Subject ←→ Query38.8102
CP002516:246767Escherichia coli KO11, complete genome77.1722 %Subject ←→ Query34.1831
NC_007384:3383983Shigella sonnei Ss046, complete genome77.0741 %Subject Query30.7059
NC_008149:2802392Yersinia pestis Nepal516, complete genome77.0649 %Subject ←→ Query33.694
NC_013592:804288Dickeya dadantii Ech586, complete genome77.0343 %Subject ←→ Query41.0498
NC_004741:4132056Shigella flexneri 2a str. 2457T, complete genome76.9547 %Subject ←→ Query33.5725
NC_005810:1467772Yersinia pestis biovar Microtus str. 91001, complete genome76.9516 %Subject ←→ Query33.8477
NC_013961:629307Erwinia amylovora, complete genome76.9271 %Subject ←→ Query31.6178
NC_014306:4376012Erwinia billingiae Eb661, complete genome76.921 %Subject ←→ Query33.4124
NC_007613:4217557*Shigella boydii Sb227, complete genome76.9087 %Subject Query28.4055
NC_010658:3622610Shigella boydii CDC 3083-94, complete genome76.8689 %Subject Query27.4714
NC_015224:4028150Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,76.8382 %Subject Query30.0389
NC_008563:318993*Escherichia coli APEC O1, complete genome76.8229 %Subject ←→ Query32.633
NC_010159:3120642Yersinia pestis Angola, complete genome76.8168 %Subject ←→ Query32.175
NC_008149:2337336Yersinia pestis Nepal516, complete genome76.8045 %Subject Query29.9068
NC_008150:2207198Yersinia pestis Antiqua, complete genome76.8045 %Subject Query30.6764
NC_010694:436500*Erwinia tasmaniensis, complete genome76.8015 %Subject ←→ Query37.5757
NC_003197:2870268Salmonella typhimurium LT2, complete genome76.7953 %Subject Query30.0928
AP010958:3853082*Escherichia coli O103:H2 str. 12009 DNA, complete genome76.7953 %Subject ←→ Query37.9582
NC_013716:5020204Citrobacter rodentium ICC168, complete genome76.7463 %Subject ←→ Query45.8692
NC_015061:4286000Rahnella sp. Y9602 chromosome, complete genome76.7341 %Subject ←→ Query38.7686
NC_010159:172469Yersinia pestis Angola, complete genome76.731 %Subject ←→ Query34.6468
NC_013592:956829*Dickeya dadantii Ech586, complete genome76.7188 %Subject ←→ Query47.1245
NC_014228:3391500Xenorhabdus nematophila ATCC 19061, complete genome76.6851 %Subject ←→ Query35.9268
NC_007384:3741708Shigella sonnei Ss046, complete genome76.6728 %Subject ←→ Query32.0692
NC_009792:4017510*Citrobacter koseri ATCC BAA-895, complete genome76.6207 %Subject ←→ Query34.9768
NC_010634:4150763Yersinia pseudotuberculosis PB1/+, complete genome76.6023 %Subject Query30.8229
NC_010465:1790739Yersinia pseudotuberculosis YPIII, complete genome76.5809 %Subject ←→ Query33.84
NC_009792:859228Citrobacter koseri ATCC BAA-895, complete genome76.5809 %Subject ←→ Query32.1465
NC_012214:537000Erwinia pyrifoliae Ep1/96, complete genome76.5686 %Subject ←→ Query35.4761
NC_008150:4140804Yersinia pestis Antiqua, complete genome76.492 %Subject ←→ Query31.3862
NC_012214:1650523*Erwinia pyrifoliae Ep1/96, complete genome76.4154 %Subject ←→ Query42.5971
NC_004741:3041294*Shigella flexneri 2a str. 2457T, complete genome76.3726 %Subject ←→ Query33.6878
NC_008150:844727Yersinia pestis Antiqua, complete genome76.3297 %Subject ←→ Query33.1448
NC_013716:1138441*Citrobacter rodentium ICC168, complete genome76.3266 %Subject ←→ Query43.1029
NC_008149:3556999*Yersinia pestis Nepal516, complete genome76.3174 %Subject ←→ Query32.6568
CP002185:794732Escherichia coli W, complete genome76.3113 %Subject ←→ Query35.8767
NC_014306:2442471Erwinia billingiae Eb661, complete genome76.3051 %Subject ←→ Query40.5652
NC_015061:1598920Rahnella sp. Y9602 chromosome, complete genome76.299 %Subject ←→ Query47.3688
NC_004088:3689000*Yersinia pestis KIM, complete genome76.296 %Subject ←→ Query32.8803
NC_008258:3581583Shigella flexneri 5 str. 8401, complete genome76.2868 %Subject ←→ Query32.3694
NC_004431:364000*Escherichia coli CFT073, complete genome76.2806 %Subject ←→ Query34.6588
NC_012214:1355500Erwinia pyrifoliae Ep1/96, complete genome76.2806 %Subject ←→ Query34.9138
NC_014228:1336466*Xenorhabdus nematophila ATCC 19061, complete genome76.2745 %Subject ←→ Query36.126
NC_009801:3956917Escherichia coli E24377A, complete genome76.2684 %Subject Query29.2923
NC_010634:3720214*Yersinia pseudotuberculosis PB1/+, complete genome76.2592 %Subject ←→ Query33.0998
NC_014306:1981956Erwinia billingiae Eb661, complete genome76.155 %Subject ←→ Query39.8022
NC_006155:1756000Yersinia pseudotuberculosis IP 32953, complete genome76.1458 %Subject ←→ Query34.0503
NC_005810:3917254Yersinia pestis biovar Microtus str. 91001, complete genome76.1428 %Subject ←→ Query32.5203
NC_013592:2968500*Dickeya dadantii Ech586, complete genome76.1366 %Subject ←→ Query43.4958
NC_003143:1059580*Yersinia pestis CO92, complete genome76.1305 %Subject ←→ Query32.9385
NC_011750:2928990*Escherichia coli IAI39 chromosome, complete genome76.1029 %Subject ←→ Query34.2283
NC_013716:2139952*Citrobacter rodentium ICC168, complete genome76.0846 %Subject ←→ Query46.8566
NC_008150:317903Yersinia pestis Antiqua, complete genome76.0723 %Subject ←→ Query32.3745
NC_013716:4306695*Citrobacter rodentium ICC168, complete genome76.057 %Subject ←→ Query44.9938
AC_000091:3976888Escherichia coli W3110 DNA, complete genome76.0417 %Subject Query28.508
NC_010694:2716348Erwinia tasmaniensis, complete genome76.0386 %Subject ←→ Query33.1268
NC_013956:3273340Pantoea ananatis LMG 20103 chromosome, complete genome76.0263 %Subject ←→ Query46.4305
NC_003143:4105754Yersinia pestis CO92, complete genome76.0202 %Subject ←→ Query32.2349
NC_009800:3787320*Escherichia coli HS, complete genome75.9926 %Subject Query30.5691
NC_010473:1384000Escherichia coli str. K-12 substr. DH10B, complete genome75.9865 %Subject Query29.3957
NC_012214:2019000Erwinia pyrifoliae Ep1/96, complete genome75.9651 %Subject ←→ Query32.0478
NC_014228:4331327Xenorhabdus nematophila ATCC 19061, complete genome75.9651 %Subject ←→ Query39.0674
NC_006511:4465495Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC75.9559 %Subject ←→ Query38.1746
NC_014500:1066911*Dickeya dadantii 3937 chromosome, complete genome75.9498 %Subject ←→ Query46.7354
NC_011080:2870428Salmonella enterica subsp. enterica serovar Newport str. SL254,75.9498 %Subject ←→ Query37.0617
NC_013961:1246454*Erwinia amylovora, complete genome75.9038 %Subject ←→ Query46.1552
NC_010693:1Erwinia tasmaniensis plasmid pET46, complete sequence75.8977 %Subject ←→ Query32.8407
NC_006155:3805640*Yersinia pseudotuberculosis IP 32953, complete genome75.8946 %Subject ←→ Query33.3679
NC_007384:1086025Shigella sonnei Ss046, complete genome75.8854 %Subject ←→ Query41.0342
NC_013716:3512950*Citrobacter rodentium ICC168, complete genome75.8487 %Subject ←→ Query42.9351
NC_013508:26348*Edwardsiella tarda EIB202, complete genome75.8211 %Subject ←→ Query46.5998
NC_014837:1873020*Pantoea sp. At-9b chromosome, complete genome75.8211 %Subject ←→ Query34.1637
NC_015062:58826Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence75.7751 %Subject ←→ Query39.5306
NC_009800:3685651*Escherichia coli HS, complete genome75.7721 %Subject ←→ Query32.4427
NC_004431:4270305*Escherichia coli CFT073, complete genome75.7047 %Subject ←→ Query35.4989
NC_008253:3161311Escherichia coli 536, complete genome75.671 %Subject ←→ Query37.787
NC_007712:1182518*Sodalis glossinidius str. 'morsitans', complete genome75.6373 %Subject ←→ Query33.9981
NC_011083:2847318*Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,75.5821 %Subject ←→ Query36.0789
NC_010468:231000Escherichia coli ATCC 8739, complete genome75.5239 %Subject ←→ Query33.0413
NC_004741:4364235*Shigella flexneri 2a str. 2457T, complete genome75.4963 %Subject ←→ Query32.4529
NC_004337:4374500*Shigella flexneri 2a str. 301, complete genome75.4871 %Subject ←→ Query34.0714
NC_012962:2587756Photorhabdus asymbiotica, complete genome75.4779 %Subject ←→ Query37.733
NC_010634:1755548Yersinia pseudotuberculosis PB1/+, complete genome75.4688 %Subject ←→ Query34.0759
NC_007946:289425*Escherichia coli UTI89, complete genome75.4534 %Subject ←→ Query36.7308
NC_014228:3442159Xenorhabdus nematophila ATCC 19061, complete genome75.4105 %Subject ←→ Query39.4354
NC_013592:3263005Dickeya dadantii Ech586, complete genome75.3952 %Subject ←→ Query45.2202
CU928160:3709081Escherichia coli IAI1 chromosome, complete genome75.3523 %Subject ←→ Query31.5411
NC_010473:279948Escherichia coli str. K-12 substr. DH10B, complete genome75.3462 %Subject Query31.2865
NC_000913:303719*Escherichia coli K12, complete genome75.3431 %Subject Query29.8912
AC_000091:303719Escherichia coli W3110 DNA, complete genome75.3431 %Subject Query30.0553
NC_010468:1816359*Escherichia coli ATCC 8739, complete genome75.3401 %Subject Query31.2101
NC_007606:1209132Shigella dysenteriae Sd197, complete genome75.3339 %Subject Query26.4065
NC_004337:2747917*Shigella flexneri 2a str. 301, complete genome75.3309 %Subject Query30.0523
NC_014121:2330451Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete75.3094 %Subject ←→ Query38.8784
CP002516:1902431*Escherichia coli KO11, complete genome75.3033 %Subject Query28.6874
NC_014500:4691915Dickeya dadantii 3937 chromosome, complete genome75.3002 %Subject ←→ Query47.1586
NC_011083:3171171*Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,75.3002 %Subject Query31.1395
NC_015968:4790239*Enterobacter asburiae LF7a chromosome, complete genome75.2819 %Subject ←→ Query39.0017
NC_012912:1701231*Dickeya zeae Ech1591, complete genome75.2757 %Subject ←→ Query36.2459
NC_010102:1829357Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,75.2604 %Subject ←→ Query33.4505
NC_012214:745302Erwinia pyrifoliae Ep1/96, complete genome75.2604 %Subject ←→ Query35.1441
NC_011748:4792703*Escherichia coli 55989, complete genome75.2482 %Subject ←→ Query31.6938
CU928145:4792703*Escherichia coli 55989 chromosome, complete genome75.2482 %Subject ←→ Query31.6938
NC_014840:205723Pantoea sp. At-9b plasmid pPAT9B03, complete sequence75.239 %Subject ←→ Query32.7389
NC_003197:2720726Salmonella typhimurium LT2, complete genome75.1899 %Subject Query30.2164
NC_002655:3919545Escherichia coli O157:H7 EDL933, complete genome75.1746 %Subject ←→ Query39.1881
NC_012917:3565268*Pectobacterium carotovorum subsp. carotovorum PC1, complete genome75.1746 %Subject ←→ Query40.3986
NC_008563:4707826Escherichia coli APEC O1, complete genome75.1532 %Subject ←→ Query32.3018
NC_004337:3621985Shigella flexneri 2a str. 301, complete genome75.1501 %Subject ←→ Query32.264
NC_015061:1481500*Rahnella sp. Y9602 chromosome, complete genome75.1409 %Subject ←→ Query45.531
NC_011750:1978801Escherichia coli IAI39 chromosome, complete genome75.1256 %Subject ←→ Query33.1799
NC_002695:3852233Escherichia coli O157:H7 str. Sakai, complete genome75.1042 %Subject ←→ Query40.3549
NC_010067:3056774*Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete75.1011 %Subject ←→ Query43.9689
NC_007384:2933625*Shigella sonnei Ss046, complete genome75.0858 %Subject ←→ Query34.6303
NC_010498:2847359*Escherichia coli SMS-3-5, complete genome75.0766 %Subject ←→ Query34.4349
AP010958:604719Escherichia coli O103:H2 str. 12009 DNA, complete genome75.0766 %Subject ←→ Query33.5664
NC_013961:2932348Erwinia amylovora, complete genome75.0582 %Subject ←→ Query35.1143
NC_010468:1130000*Escherichia coli ATCC 8739, complete genome75.0429 %Subject ←→ Query36.0544
NC_008253:334467*Escherichia coli 536, complete genome75.0276 %Subject ←→ Query34.2564