Pre_GI: OUP Neighbours

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Query: NC_012668:1036000 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

D: 38.771

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

Number of Neighbours: 16

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_012578:2479150*Vibrio cholerae M66-2 chromosome I, complete sequence87.4571 %Subject ←→ Query32.4052
NC_009457:2095366*Vibrio cholerae O395 chromosome 2, complete sequence87.7574 %Subject ←→ Query33.6492
NC_016445:2012294*Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, complete87.4449 %Subject ←→ Query34.3396
NC_016602:3122700*Vibrio furnissii NCTC 11218 chromosome 1, complete sequence76.5809 %Subject ←→ Query35.5767
NC_012582:2626786*Vibrio cholerae O395 chromosome chromosome I, complete sequence87.4602 %Subject ←→ Query37.0987
NC_002488:1812696Xylella fastidiosa 9a5c, complete genome76.3143 %Subject ←→ Query38.8176
NC_016944:2588435*Vibrio cholerae IEC224 chromosome I, complete sequence87.5123 %Subject ←→ Query39.3847
NC_016628:1190366*Vibrio furnissii NCTC 11218 chromosome 2, complete sequence79.329 %Subject ←→ Query42.0825