Pre_GI: OUP MCL Sub Cluster Neighbours

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Query: NC_012668:1036000 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

D: 38.771

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host DescriptionProposed Island FlowSubject Island D
NC_017387:147906*Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomeSubject Query24.6291
NC_016603:23756Acinetobacter calcoaceticus PHEA-2 chromosome, complete genomeSubject Query24.7021
NC_005966:715591Acinetobacter sp. ADP1, complete genomeSubject Query25.2966
NC_011595:3015895Acinetobacter baumannii AB307-0294, complete genomeSubject ←→ Query29.6158
NC_009659:3520093*Janthinobacterium sp. Marseille chromosome, complete genomeSubject ←→ Query29.6936
NC_009659:2523874Janthinobacterium sp. Marseille chromosome, complete genomeSubject ←→ Query30.9105
NC_017162:158289*Acinetobacter baumannii 1656-2 chromosome, complete genomeSubject ←→ Query31.3248
NC_017171:825994Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomeSubject ←→ Query31.4814
NC_017162:827567Acinetobacter baumannii 1656-2 chromosome, complete genomeSubject ←→ Query31.6946
NC_011595:3607402Acinetobacter baumannii AB307-0294, complete genomeSubject ←→ Query31.8166
NC_012578:2479150*Vibrio cholerae M66-2 chromosome I, complete sequenceSubject ←→ Query32.4052
NC_020911:2921925*Octadecabacter antarcticus 307, complete genomeSubject ←→ Query32.5443
NC_009457:2095366*Vibrio cholerae O395 chromosome 2, complete sequenceSubject ←→ Query33.6492
NC_002488:2235883Xylella fastidiosa 9a5c, complete genomeSubject ←→ Query33.7761
NC_002488:45219*Xylella fastidiosa 9a5c, complete genomeSubject ←→ Query34.1567
NC_002488:2546495Xylella fastidiosa 9a5c, complete genomeSubject ←→ Query34.3385
NC_016445:2012294*Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeSubject ←→ Query34.3396
NC_002488:1157684Xylella fastidiosa 9a5c, complete genomeSubject ←→ Query34.9246
NC_016602:3122700*Vibrio furnissii NCTC 11218 chromosome 1, complete sequenceSubject ←→ Query35.5767
NC_002488:2502000*Xylella fastidiosa 9a5c, complete genomeSubject ←→ Query35.6822
NC_012582:2626786*Vibrio cholerae O395 chromosome chromosome I, complete sequenceSubject ←→ Query37.0987
NC_004556:1933944Xylella fastidiosa Temecula1, complete genomeSubject ←→ Query37.8222
NC_010513:44886*Xylella fastidiosa M12 chromosome, complete genomeSubject ←→ Query38.5518
NC_012668:1036000Vibrio cholerae MJ-1236 chromosome 1, complete sequenceSubject ←→ Query38.771
NC_002488:1812696Xylella fastidiosa 9a5c, complete genomeSubject ←→ Query38.8176
NC_004556:1132354*Xylella fastidiosa Temecula1, complete genomeSubject ←→ Query38.8649
NC_016944:2588435*Vibrio cholerae IEC224 chromosome I, complete sequenceSubject ←→ Query39.3847
NC_004556:151593*Xylella fastidiosa Temecula1, complete genomeSubject ←→ Query39.9027
NC_010513:1128000Xylella fastidiosa M12 chromosome, complete genomeSubject ←→ Query40.9199
NC_016628:1190366*Vibrio furnissii NCTC 11218 chromosome 2, complete sequenceSubject ←→ Query42.0825
NC_004556:1076063Xylella fastidiosa Temecula1, complete genomeSubject ←→ Query42.5799
NC_010577:1087092Xylella fastidiosa M23, complete genomeSubject ←→ Query42.7341
NC_004556:1611973Xylella fastidiosa Temecula1, complete genomeSubject ←→ Query42.9799
NC_010513:1590758*Xylella fastidiosa M12 chromosome, complete genomeSubject ←→ Query43.326
NC_017387:832000Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomeSubject ←→ Query47.4771