Pre_GI: OUP Neighbours

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Query: NC_011274:1129686 Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91

D: 39.5488

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella gallinarum is the causative agent of Fowl typhoid, a severe systemic disease of poultry. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 198




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_005810:4469156Yersinia pestis biovar Microtus str. 91001, complete genome76.973 %Subject Query29.5112
NC_008149:4053363Yersinia pestis Nepal516, complete genome76.3021 %Subject ←→ Query30.0006
NC_004088:266543Yersinia pestis KIM, complete genome76.299 %Subject ←→ Query30.0081
NC_011745:1055354*Escherichia coli ED1a chromosome, complete genome77.8125 %Subject ←→ Query30.2164
NC_020260:1993344Cronobacter sakazakii Sp291, complete genome77.0129 %Subject ←→ Query30.2286
NC_016863:2721826Salmonella enterica subsp. enterica serovar Typhimurium str. UK-180.4289 %Subject ←→ Query30.7584
NC_013941:5317424Escherichia coli O55:H7 str. CB9615 chromosome, complete genome77.5245 %Subject ←→ Query30.8609
NC_003277:22257Salmonella typhimurium LT2 plasmid pSLT, complete sequence76.8505 %Subject ←→ Query31.1132
NC_011745:2025725Escherichia coli ED1a chromosome, complete genome78.2322 %Subject ←→ Query31.1649
NC_016612:4823529Klebsiella oxytoca KCTC 1686 chromosome, complete genome75.5362 %Subject ←→ Query31.3367
NC_016810:2719779Salmonella enterica subsp. enterica serovar Typhimurium str80.1011 %Subject ←→ Query31.43
NC_016857:2719779Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/7480.0797 %Subject ←→ Query31.43
NC_013971:666730Erwinia amylovora ATCC 49946 chromosome, complete genome76.6789 %Subject ←→ Query31.4537
NC_016856:2773995Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S79.9418 %Subject ←→ Query31.5078
NC_016822:246715*Shigella sonnei 53G, complete genome75.5607 %Subject ←→ Query31.6959
NC_008563:3119284Escherichia coli APEC O1, complete genome80.9651 %Subject ←→ Query31.9127
NC_011742:4962008Escherichia coli S88 chromosome, complete genome77.0558 %Subject ←→ Query32.4611
NC_013353:2134556*Escherichia coli O103:H2 str. 12009, complete genome79.3107 %Subject ←→ Query32.8216
NC_013892:274297Xenorhabdus bovienii SS-2004 chromosome, complete genome75.4565 %Subject ←→ Query32.8965
NC_013941:1014386Escherichia coli O55:H7 str. CB9615 chromosome, complete genome78.1648 %Subject ←→ Query33.1965
NC_016861:22256Salmonella enterica subsp. enterica serovar Typhimurium str76.3603 %Subject ←→ Query33.2928
NC_011283:942594Klebsiella pneumoniae 342 chromosome, complete genome77.6869 %Subject ←→ Query33.3475
NC_007384:1763375Shigella sonnei Ss046, complete genome81.9485 %Subject ←→ Query33.4012
NC_012912:2285778Dickeya zeae Ech1591, complete genome75.1103 %Subject ←→ Query33.4887
NC_016860:2323017*Salmonella enterica subsp. enterica serovar Typhimurium str77.1569 %Subject ←→ Query33.5197
NC_016857:2325190*Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/7477.1477 %Subject ←→ Query33.5449
NC_016810:2325190*Salmonella enterica subsp. enterica serovar Typhimurium str77.1477 %Subject ←→ Query33.5449
NC_016856:2379027*Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S77.1201 %Subject ←→ Query33.6556
NC_016845:575123Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,75.3186 %Subject ←→ Query34.1249
NC_011353:921500Escherichia coli O157:H7 str. EC4115 chromosome, complete genome77.8891 %Subject ←→ Query34.5194
NC_011741:256932Escherichia coli IAI1 chromosome, complete genome83.0239 %Subject ←→ Query34.5956
CU928160:256932Escherichia coli IAI1 chromosome, complete genome83.0239 %Subject ←→ Query34.5956
NC_013892:753307Xenorhabdus bovienii SS-2004 chromosome, complete genome75.3401 %Subject ←→ Query34.8067
NC_013364:2522888Escherichia coli O111:H- str. 11128, complete genome81.0386 %Subject ←→ Query34.9313
NC_017046:2324554*Salmonella enterica subsp. enterica serovar Typhimurium str. 79877.163 %Subject ←→ Query35.0182
NC_014618:4312295*Enterobacter cloacae SCF1 chromosome, complete genome76.7739 %Subject ←→ Query35.071
NC_013008:918215Escherichia coli O157:H7 str. TW14359 chromosome, complete genome78.9675 %Subject ←→ Query35.1897
NC_011353:2892265Escherichia coli O157:H7 str. EC4115 chromosome, complete genome77.2733 %Subject ←→ Query35.2611
NC_021066:3769405Raoultella ornithinolytica B6, complete genome75.0368 %Subject ←→ Query35.3093
NC_012125:1517925*Salmonella enterica subsp. enterica serovar Paratyphi C strain75.0613 %Subject ←→ Query35.3356
NC_014305:126029Erwinia billingiae Eb661 plasmid pEB170, complete sequence75.2083 %Subject ←→ Query35.5879
NC_016831:1865681Salmonella enterica subsp. enterica serovar Gallinarum/pullorum92.1324 %Subject ←→ Query35.6576
NC_016831:687549*Salmonella enterica subsp. enterica serovar Gallinarum/pullorum75.4596 %Subject ←→ Query35.667
NC_011601:756885Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome79.1728 %Subject ←→ Query35.8585
NC_013364:3312379Escherichia coli O111:H- str. 11128, complete genome78.318 %Subject ←→ Query36.0044
NC_011094:4442478Salmonella enterica subsp. enterica serovar Schwarzengrund str79.375 %Subject ←→ Query36.096
NC_013941:2425233Escherichia coli O55:H7 str. CB9615 chromosome, complete genome81.155 %Subject ←→ Query36.1047
NC_004631:685357*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete75.3186 %Subject ←→ Query36.1113
NC_016832:687000*Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,75.6403 %Subject ←→ Query36.1337
NC_011601:1077548Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome79.3658 %Subject ←→ Query36.1989
NC_013961:3083816Erwinia amylovora, complete genome77.2028 %Subject ←→ Query36.2172
NC_007608:97092Shigella boydii Sb227 plasmid pSB4_227, complete sequence76.5288 %Subject ←→ Query36.3239
NC_016845:3238507*Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,77.4173 %Subject ←→ Query36.3698
NC_004431:1352906Escherichia coli CFT073, complete genome79.8529 %Subject ←→ Query36.4239
NC_002695:2158314Escherichia coli O157:H7 str. Sakai, complete genome79.0411 %Subject ←→ Query36.4725
NC_016612:5600177Klebsiella oxytoca KCTC 1686 chromosome, complete genome76.7096 %Subject ←→ Query36.4903
NC_012731:3193880*Klebsiella pneumoniae NTUH-K2044 chromosome, complete genome77.2488 %Subject ←→ Query36.6801
AP010958:1472506Escherichia coli O103:H2 str. 12009 DNA, complete genome81.3113 %Subject ←→ Query36.7127
NC_013353:1472506Escherichia coli O103:H2 str. 12009, complete genome81.3113 %Subject ←→ Query36.7127
NC_011751:1377457Escherichia coli UMN026 chromosome, complete genome79.9326 %Subject ←→ Query36.813
NC_011094:638552Salmonella enterica subsp. enterica serovar Schwarzengrund str77.3468 %Subject ←→ Query36.8525
NC_009378:106193Yersinia pestis Pestoides F plasmid MT, complete sequence75.6219 %Subject ←→ Query36.8715
NC_011353:1195179*Escherichia coli O157:H7 str. EC4115 chromosome, complete genome77.6991 %Subject ←→ Query36.9832
NC_013941:1963523Escherichia coli O55:H7 str. CB9615 chromosome, complete genome79.9571 %Subject ←→ Query36.9893
NC_016863:2324293*Salmonella enterica subsp. enterica serovar Typhimurium str. UK-176.8045 %Subject ←→ Query37.0731
NC_013364:863209Escherichia coli O111:H- str. 11128, complete genome80.9406 %Subject ←→ Query37.1558
NC_013008:2889743Escherichia coli O157:H7 str. TW14359 chromosome, complete genome77.7482 %Subject ←→ Query37.196
NC_002695:2893951Escherichia coli O157:H7 str. Sakai, complete genome78.4467 %Subject ←→ Query37.275
NC_009648:3476000Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome79.4914 %Subject ←→ Query37.4593
NC_011750:1931384Escherichia coli IAI39 chromosome, complete genome78.5386 %Subject ←→ Query37.6581
NC_013361:2169948Escherichia coli O26:H11 str. 11368 chromosome, complete genome78.5202 %Subject ←→ Query37.7614
NC_016822:1839739Shigella sonnei 53G, complete genome81.6667 %Subject ←→ Query37.9198
NC_007385:157516Shigella sonnei Ss046 plasmid pSS_046, complete sequence75.0888 %Subject ←→ Query38.0958
NC_013008:1761165Escherichia coli O157:H7 str. TW14359 chromosome, complete genome80.7322 %Subject ←→ Query38.2113
NC_013716:4824541*Citrobacter rodentium ICC168, complete genome76.5349 %Subject ←→ Query38.2235
NC_013361:1896446Escherichia coli O26:H11 str. 11368 chromosome, complete genome80.3891 %Subject ←→ Query38.2296
NC_002655:1909139Escherichia coli O157:H7 EDL933, complete genome79.4271 %Subject ←→ Query38.4667
NC_011353:1761977Escherichia coli O157:H7 str. EC4115 chromosome, complete genome79.6814 %Subject ←→ Query38.5032
NC_011750:919953Escherichia coli IAI39 chromosome, complete genome79.1667 %Subject ←→ Query38.6045
NC_011205:329155Salmonella enterica subsp. enterica serovar Dublin str. CT_0202185381.9914 %Subject ←→ Query38.7596
NC_011742:585908Escherichia coli S88 chromosome, complete genome80.6219 %Subject ←→ Query38.828
NC_011353:261220Escherichia coli O157:H7 str. EC4115 chromosome, complete genome80.9957 %Subject ←→ Query38.9884
NC_013008:261226Escherichia coli O157:H7 str. TW14359 chromosome, complete genome81.0202 %Subject ←→ Query39.1965
NC_013941:261094Escherichia coli O55:H7 str. CB9615 chromosome, complete genome81.25 %Subject ←→ Query39.1987
NC_016822:267758Shigella sonnei 53G, complete genome83.2782 %Subject ←→ Query39.2695
NC_012779:3176820*Edwardsiella ictaluri 93-146, complete genome75.5116 %Subject ←→ Query39.7546
NC_012779:305969Edwardsiella ictaluri 93-146, complete genome76.9761 %Subject ←→ Query39.836
NC_013361:1593543Escherichia coli O26:H11 str. 11368 chromosome, complete genome79.1973 %Subject ←→ Query40.2481
NC_014121:1822895Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete77.5521 %Subject ←→ Query40.59
NC_012779:2928000*Edwardsiella ictaluri 93-146, complete genome75.9589 %Subject ←→ Query41.5453
NC_016845:1773416Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,77.454 %Subject ←→ Query41.6817
NC_013283:113660Cronobacter turicensis plasmid pCTU1, complete sequence75.4718 %Subject ←→ Query42.151
NC_011283:2103500*Klebsiella pneumoniae 342 chromosome, complete genome75.8027 %Subject ←→ Query42.41
NC_016846:24500Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS2,76.9148 %Subject ←→ Query43.5812
NC_009778:3832000Enterobacter sakazakii ATCC BAA-894, complete genome76.9087 %Subject ←→ Query45.4902
NC_010660:175200*Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence76.1244 %Subject ←→ Query46.3542
NC_011283:1901229*Klebsiella pneumoniae 342 chromosome, complete genome76.7371 %Subject Query49.5744
NC_009648:1487692Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome75.962 %Subject Query49.6231
NC_009648:2465613*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome76.6881 %Subject Query50.7802