Pre_GI: OUP Neighbours

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Query: NC_011149:2040396 Salmonella enterica subsp. enterica serovar Agona str. SL483,

D: 37.9381

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella enterica subsp. enterica serovar Agona causes gastroenteritis in humans and is also pathogenic to swine and other food animals. This serovar is able to contain the Salmonella genomic island 1 multidrug resistance gene cluster. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 144




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_010498:1210145Escherichia coli SMS-3-5, complete genome76.1091 %Subject Query26.7023
NC_014561:153143Pantoea vagans C9-1 plasmid pPag1, complete sequence76.7524 %Subject ←→ Query28.1767
NC_010468:1343228Escherichia coli ATCC 8739, complete genome76.5564 %Subject ←→ Query29.0512
NC_010465:429095Yersinia pseudotuberculosis YPIII, complete genome75.3094 %Subject ←→ Query29.1646
NC_005810:4469156Yersinia pestis biovar Microtus str. 91001, complete genome76.0907 %Subject ←→ Query29.5112
NC_012912:4737703Dickeya zeae Ech1591, complete genome78.5509 %Subject ←→ Query29.5142
NC_008149:4053363Yersinia pestis Nepal516, complete genome75.1256 %Subject ←→ Query30.0006
NC_004088:266543Yersinia pestis KIM, complete genome75.3248 %Subject ←→ Query30.0081
NC_015968:204969*Enterobacter asburiae LF7a chromosome, complete genome79.8499 %Subject ←→ Query30.2205
NC_012880:1711062*Dickeya dadantii Ech703, complete genome78.5386 %Subject ←→ Query30.2924
NC_014562:1935088Pantoea vagans C9-1 chromosome, complete genome75.1899 %Subject ←→ Query30.3988
NC_012880:913698Dickeya dadantii Ech703, complete genome76.7524 %Subject ←→ Query30.49
NC_008149:1221637Yersinia pestis Nepal516, complete genome77.6961 %Subject ←→ Query30.5812
NC_015663:1934863Enterobacter aerogenes KCTC 2190 chromosome, complete genome75.7077 %Subject ←→ Query30.6937
NC_015968:4389871Enterobacter asburiae LF7a chromosome, complete genome78.2445 %Subject ←→ Query30.7332
NC_004631:2755306Salmonella enterica subsp. enterica serovar Typhi Ty2, complete76.8842 %Subject ←→ Query30.7575
NC_013282:646569Cronobacter turicensis, complete genome78.269 %Subject ←→ Query30.8062
NC_008253:2198583Escherichia coli 536, complete genome75.8578 %Subject ←→ Query30.9551
NC_012880:1127997*Dickeya dadantii Ech703, complete genome80.674 %Subject ←→ Query30.9614
NC_003198:2769449Salmonella enterica subsp. enterica serovar Typhi str. CT18,76.8842 %Subject ←→ Query31.0494
NC_012912:2800884*Dickeya zeae Ech1591, complete genome78.0729 %Subject ←→ Query31.095
NC_006155:3040769Yersinia pseudotuberculosis IP 32953, complete genome77.1446 %Subject ←→ Query31.1041
NC_012917:3378759Pectobacterium carotovorum subsp. carotovorum PC1, complete genome78.3977 %Subject ←→ Query31.1132
NC_006511:3759550Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC84.4669 %Subject ←→ Query31.1345
NC_010634:2960000Yersinia pseudotuberculosis PB1/+, complete genome77.3928 %Subject ←→ Query31.2014
NC_012917:4328463Pectobacterium carotovorum subsp. carotovorum PC1, complete genome80.3799 %Subject ←→ Query31.405
NC_012962:3864000*Photorhabdus asymbiotica, complete genome75.3248 %Subject ←→ Query31.492
NC_012912:1295653Dickeya zeae Ech1591, complete genome76.6391 %Subject ←→ Query31.554
NC_011149:3895921Salmonella enterica subsp. enterica serovar Agona str. SL483,83.7776 %Subject ←→ Query31.5601
NC_010067:171053Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete76.4399 %Subject ←→ Query31.5722
NC_015663:4447984Enterobacter aerogenes KCTC 2190 chromosome, complete genome80.5178 %Subject ←→ Query31.6444
NC_013282:3719500*Cronobacter turicensis, complete genome78.5447 %Subject ←→ Query31.6817
NC_004088:1801819Yersinia pestis KIM, complete genome77.6103 %Subject ←→ Query31.8002
NC_010102:2881714Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,77.6654 %Subject ←→ Query32.0373
NC_004631:3841975Salmonella enterica subsp. enterica serovar Typhi Ty2, complete83.0515 %Subject ←→ Query32.0647
NC_010102:3919999Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,84.3719 %Subject ←→ Query32.0708
NC_003197:3971905Salmonella typhimurium LT2, complete genome84.1054 %Subject ←→ Query32.0829
NC_014500:3519722Dickeya dadantii 3937 chromosome, complete genome80.7874 %Subject ←→ Query32.164
NC_008149:2411161Yersinia pestis Nepal516, complete genome76.2592 %Subject ←→ Query32.2349
NC_012912:1229333Dickeya zeae Ech1591, complete genome80.8456 %Subject ←→ Query32.2592
NC_007712:1893066*Sodalis glossinidius str. 'morsitans', complete genome79.4148 %Subject ←→ Query32.276
NC_012912:325913Dickeya zeae Ech1591, complete genome79.3137 %Subject ←→ Query32.3565
NC_011083:3985618Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,83.5386 %Subject ←→ Query32.4599
NC_003198:3855157Salmonella enterica subsp. enterica serovar Typhi str. CT18,83.4283 %Subject ←→ Query32.5632
NC_013421:1954915*Pectobacterium wasabiae WPP163, complete genome78.5202 %Subject ←→ Query32.6483
NC_010465:1724000Yersinia pseudotuberculosis YPIII, complete genome77.1324 %Subject ←→ Query32.6727
NC_013592:3397304Dickeya dadantii Ech586, complete genome79.9786 %Subject ←→ Query32.6808
NC_012917:4646491Pectobacterium carotovorum subsp. carotovorum PC1, complete genome78.9124 %Subject ←→ Query32.6958
NC_013508:1262333Edwardsiella tarda EIB202, complete genome75.3676 %Subject ←→ Query32.8692
NC_010634:1565788Yersinia pseudotuberculosis PB1/+, complete genome76.6115 %Subject ←→ Query33.0113
NC_006155:1567306Yersinia pseudotuberculosis IP 32953, complete genome77.1814 %Subject ←→ Query33.2342
NC_012880:3645304Dickeya dadantii Ech703, complete genome81.4308 %Subject ←→ Query33.3293
NC_013716:1756545*Citrobacter rodentium ICC168, complete genome79.1851 %Subject ←→ Query33.4286
NC_012779:1966205Edwardsiella ictaluri 93-146, complete genome75.5024 %Subject ←→ Query33.5421
NC_013421:3752619*Pectobacterium wasabiae WPP163, complete genome77.7941 %Subject ←→ Query33.6393
NC_003143:2849377Yersinia pestis CO92, complete genome76.6299 %Subject ←→ Query33.8521
NC_010159:1861465Yersinia pestis Angola, complete genome76.4614 %Subject ←→ Query33.8947
NC_005810:2613456Yersinia pestis biovar Microtus str. 91001, complete genome76.5472 %Subject ←→ Query33.9433
NC_012912:777592*Dickeya zeae Ech1591, complete genome77.2396 %Subject ←→ Query33.9737
NC_014562:1698253Pantoea vagans C9-1 chromosome, complete genome76.1274 %Subject ←→ Query33.9839
NC_004547:3817656Erwinia carotovora subsp. atroseptica SCRI1043, complete genome75.095 %Subject ←→ Query34.15
NC_013592:3618248*Dickeya dadantii Ech586, complete genome77.2917 %Subject ←→ Query34.4581
NC_013508:3593000Edwardsiella tarda EIB202, complete genome77.8738 %Subject ←→ Query34.4706
NC_004547:843475*Erwinia carotovora subsp. atroseptica SCRI1043, complete genome78.1097 %Subject ←→ Query34.6881
NC_012779:3316877Edwardsiella ictaluri 93-146, complete genome77.6869 %Subject ←→ Query34.9445
NC_009792:808332Citrobacter koseri ATCC BAA-895, complete genome78.6642 %Subject ←→ Query35.0274
NC_010694:3055403Erwinia tasmaniensis, complete genome80.3554 %Subject ←→ Query35.0644
NC_009778:1902995Enterobacter sakazakii ATCC BAA-894, complete genome75.7169 %Subject ←→ Query35.1593
NC_014562:1402863Pantoea vagans C9-1 chromosome, complete genome76.4859 %Subject ←→ Query35.29
NC_003198:3824187Salmonella enterica subsp. enterica serovar Typhi str. CT18,77.6042 %Subject ←→ Query35.4207
NC_010694:614985Erwinia tasmaniensis, complete genome80.3278 %Subject ←→ Query35.5876
NC_003198:3586000*Salmonella enterica subsp. enterica serovar Typhi str. CT18,75.7598 %Subject ←→ Query35.6335
NC_010067:3753971Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete83.5723 %Subject ←→ Query35.7065
NC_006905:3942753Salmonella enterica subsp. enterica serovar Choleraesuis str78.4344 %Subject ←→ Query35.749
NC_013421:1038500Pectobacterium wasabiae WPP163, complete genome76.4032 %Subject ←→ Query35.7825
NC_010067:632683Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete82.5092 %Subject ←→ Query35.8098
NC_013421:1545386Pectobacterium wasabiae WPP163, complete genome80.6526 %Subject ←→ Query35.9253
NC_012779:2424967*Edwardsiella ictaluri 93-146, complete genome77.3407 %Subject ←→ Query35.992
NC_004631:685357*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete78.5172 %Subject ←→ Query36.1113
NC_004631:3809678Salmonella enterica subsp. enterica serovar Typhi Ty2, complete77.6532 %Subject ←→ Query36.1376
NC_013961:3083816Erwinia amylovora, complete genome77.3683 %Subject ←→ Query36.2172
NC_006511:682863*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC80.7537 %Subject ←→ Query36.3874
NC_003197:4005857Salmonella typhimurium LT2, complete genome78.4007 %Subject ←→ Query36.3904
NC_013421:1143500Pectobacterium wasabiae WPP163, complete genome80.2175 %Subject ←→ Query36.4256
NC_011080:2789744*Salmonella enterica subsp. enterica serovar Newport str. SL254,75.4626 %Subject ←→ Query36.512
NC_011080:3976441Salmonella enterica subsp. enterica serovar Newport str. SL254,78.5723 %Subject ←→ Query36.5166
NC_012880:2778795Dickeya dadantii Ech703, complete genome79.568 %Subject ←→ Query36.5333
NC_011149:361765Salmonella enterica subsp. enterica serovar Agona str. SL483,79.1115 %Subject ←→ Query36.5643
NC_004547:138500Erwinia carotovora subsp. atroseptica SCRI1043, complete genome75.4381 %Subject ←→ Query36.6454
NC_009778:3454790Enterobacter sakazakii ATCC BAA-894, complete genome76.6207 %Subject ←→ Query36.7583
NC_011080:383441Salmonella enterica subsp. enterica serovar Newport str. SL254,78.8603 %Subject ←→ Query37.0114
NC_012779:2064582Edwardsiella ictaluri 93-146, complete genome77.1446 %Subject ←→ Query37.0151
NC_008150:1420825*Yersinia pestis Antiqua, complete genome75.4657 %Subject ←→ Query37.0184
NC_005810:1794490*Yersinia pestis biovar Microtus str. 91001, complete genome75.6005 %Subject ←→ Query37.035
NC_007712:433500Sodalis glossinidius str. 'morsitans', complete genome78.4314 %Subject ←→ Query37.0845
NC_003198:2297837Salmonella enterica subsp. enterica serovar Typhi str. CT18,78.318 %Subject ←→ Query37.159
NC_010102:3955479Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,78.7592 %Subject ←→ Query37.2943
NC_003143:2137945*Yersinia pestis CO92, complete genome75.3248 %Subject ←→ Query37.3318
NC_006511:3794017Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC77.7451 %Subject ←→ Query37.3602
NC_007645:6955479Hahella chejuensis KCTC 2396, complete genome75.4902 %Subject ←→ Query37.3602
NC_011080:2342672Salmonella enterica subsp. enterica serovar Newport str. SL254,78.0668 %Subject ←→ Query37.4165
NC_007645:2049988*Hahella chejuensis KCTC 2396, complete genome75.1256 %Subject ←→ Query37.4503
NC_009648:3476000Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome76.6452 %Subject ←→ Query37.4593
NC_014394:3036758Gallionella capsiferriformans ES-2 chromosome, complete genome75.8977 %Subject ←→ Query37.5243
NC_014500:2934232*Dickeya dadantii 3937 chromosome, complete genome77.9657 %Subject ←→ Query37.5286
NC_006905:2355290Salmonella enterica subsp. enterica serovar Choleraesuis str78.5263 %Subject ←→ Query37.6094
NC_011083:4020000Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,79.0288 %Subject ←→ Query37.6885
NC_012962:3568046Photorhabdus asymbiotica, complete genome78.364 %Subject ←→ Query37.813
NC_014500:894136Dickeya dadantii 3937 chromosome, complete genome79.5956 %Subject ←→ Query37.8586
NC_014500:1646854*Dickeya dadantii 3937 chromosome, complete genome78.7316 %Subject ←→ Query37.9513
NC_005126:1265071Photorhabdus luminescens subsp. laumondii TTO1, complete genome76.4706 %Subject ←→ Query37.9976
NC_011149:2294500Salmonella enterica subsp. enterica serovar Agona str. SL483,77.3989 %Subject ←→ Query38.0253
NC_011149:3930358Salmonella enterica subsp. enterica serovar Agona str. SL483,78.8358 %Subject ←→ Query38.0507
NC_007645:6991163Hahella chejuensis KCTC 2396, complete genome78.5662 %Subject ←→ Query38.1445
NC_003198:2703013*Salmonella enterica subsp. enterica serovar Typhi str. CT18,76.1612 %Subject ←→ Query38.1505
NC_013716:4824541*Citrobacter rodentium ICC168, complete genome77.2794 %Subject ←→ Query38.2235
NC_013282:1256769Cronobacter turicensis, complete genome81.7831 %Subject ←→ Query38.8742
NC_012880:1585255Dickeya dadantii Ech703, complete genome75.8119 %Subject ←→ Query39.2242
NC_013508:1687432Edwardsiella tarda EIB202, complete genome76.3235 %Subject ←→ Query39.3906
NC_011080:3941909Salmonella enterica subsp. enterica serovar Newport str. SL254,84.0074 %Subject ←→ Query39.4334
NC_012779:3176820*Edwardsiella ictaluri 93-146, complete genome75.098 %Subject ←→ Query39.7546
NC_006905:2805877*Salmonella enterica subsp. enterica serovar Choleraesuis str76.875 %Subject ←→ Query39.786
NC_015663:770485*Enterobacter aerogenes KCTC 2190 chromosome, complete genome75.098 %Subject ←→ Query39.8332
NC_012779:305969Edwardsiella ictaluri 93-146, complete genome77.7328 %Subject ←→ Query39.836
NC_004547:667988*Erwinia carotovora subsp. atroseptica SCRI1043, complete genome75.0184 %Subject ←→ Query39.9614
NC_012962:1661683Photorhabdus asymbiotica, complete genome75.7935 %Subject ←→ Query40.4188
NC_012779:2856051Edwardsiella ictaluri 93-146, complete genome78.7684 %Subject ←→ Query40.677
NC_013592:1424560Dickeya dadantii Ech586, complete genome76.9332 %Subject ←→ Query41.2418
NC_013282:3216226*Cronobacter turicensis, complete genome77.7635 %Subject ←→ Query41.2788
NC_014228:3282500Xenorhabdus nematophila ATCC 19061, complete genome77.5123 %Subject ←→ Query41.4806
NC_012779:1449500*Edwardsiella ictaluri 93-146, complete genome78.6458 %Subject ←→ Query41.6091
NC_013508:876431*Edwardsiella tarda EIB202, complete genome75.9926 %Subject ←→ Query41.7282
NC_013283:113660Cronobacter turicensis plasmid pCTU1, complete sequence75.3339 %Subject ←→ Query42.151
NC_013508:2130681*Edwardsiella tarda EIB202, complete genome75.8793 %Subject ←→ Query42.2435
NC_009648:293052*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome78.9062 %Subject ←→ Query43.5401
NC_013508:2356865*Edwardsiella tarda EIB202, complete genome78.0208 %Subject ←→ Query44.5077
NC_013508:1289159*Edwardsiella tarda EIB202, complete genome79.1146 %Subject ←→ Query44.7971
NC_012779:1286500Edwardsiella ictaluri 93-146, complete genome75.2022 %Subject ←→ Query45.1799
NC_012779:2586175Edwardsiella ictaluri 93-146, complete genome78.1066 %Subject ←→ Query45.323
NC_009778:3832000Enterobacter sakazakii ATCC BAA-894, complete genome75.6311 %Subject ←→ Query45.4902
NC_012779:2957000Edwardsiella ictaluri 93-146, complete genome75.4534 %Subject ←→ Query46.4521
NC_009778:1141716Enterobacter sakazakii ATCC BAA-894, complete genome79.568 %Subject Query48.5924
NC_009648:1487692Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome77.5031 %Subject Query49.6231
NC_009648:2465613*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome78.2904 %Subject Query50.7802