Pre_GI: OUP Neighbours

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Query: NC_011083:4466634 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,

D: 37.5078

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a multidrug resistant strain. Salmonella enterica subsp. enterica serovar Heidelberg is one of the more common serovars causing disease in the USA. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 58




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_011080:4461851Salmonella enterica subsp. enterica serovar Newport str. SL254,97.2733 %Subject ←→ Query37.425
NC_004631:4300457Salmonella enterica subsp. enterica serovar Typhi Ty2, complete96.8505 %Subject ←→ Query36.6055
NC_003198:4315807Salmonella enterica subsp. enterica serovar Typhi str. CT18,96.8107 %Subject ←→ Query36.5568
NC_011149:4390315Salmonella enterica subsp. enterica serovar Agona str. SL483,96.7433 %Subject ←→ Query36.2711
NC_003197:4470683Salmonella typhimurium LT2, complete genome96.7371 %Subject ←→ Query37.2395
NC_010102:4396500Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,96.5931 %Subject ←→ Query37.4536
NC_006511:4225455Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC92.0558 %Subject ←→ Query38.7268
NC_006905:4405301Salmonella enterica subsp. enterica serovar Choleraesuis str88.9338 %Subject ←→ Query35.9057
NC_010067:3310336Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete86.1183 %Subject ←→ Query42.4515
NC_008563:1505405Escherichia coli APEC O1, complete genome78.7132 %Subject ←→ Query35.9085
NC_013421:4714478*Pectobacterium wasabiae WPP163, complete genome78.6458 %Subject ←→ Query44.5469
NC_010067:2881448Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete78.3793 %Subject ←→ Query29.2042
NC_003197:3005842*Salmonella typhimurium LT2, complete genome77.5 %Subject ←→ Query34.6485
NC_013421:2613137*Pectobacterium wasabiae WPP163, complete genome77.4969 %Subject ←→ Query36.1152
NC_010067:2488141Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete77.454 %Subject ←→ Query36.336
NC_009800:1589000Escherichia coli HS, complete genome77.4418 %Subject ←→ Query31.8533
NC_010473:1661000Escherichia coli str. K-12 substr. DH10B, complete genome77.356 %Subject ←→ Query30.7423
NC_000913:1570431Escherichia coli K12, complete genome77.356 %Subject ←→ Query31.0489
NC_011080:2982346Salmonella enterica subsp. enterica serovar Newport str. SL254,77.3009 %Subject ←→ Query35.1591
AC_000091:1574000Escherichia coli W3110 DNA, complete genome77.261 %Subject ←→ Query31.0826
CU928160:1579375Escherichia coli IAI1 chromosome, complete genome77.2059 %Subject ←→ Query31.5014
NC_010468:2345781Escherichia coli ATCC 8739, complete genome77.1691 %Subject ←→ Query30.5435
CP002185:1681327Escherichia coli W, complete genome76.9822 %Subject ←→ Query31.3882
NC_006905:2960260Salmonella enterica subsp. enterica serovar Choleraesuis str76.97 %Subject ←→ Query36.3752
NC_011149:25760Salmonella enterica subsp. enterica serovar Agona str. SL483,76.9638 %Subject ←→ Query32.5085
NC_003197:25803Salmonella typhimurium LT2, complete genome76.9424 %Subject ←→ Query31.0828
NC_006511:2090058Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC76.9301 %Subject ←→ Query42.455
NC_010102:2967464Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,76.9148 %Subject ←→ Query35.1887
NC_004631:2205821Salmonella enterica subsp. enterica serovar Typhi Ty2, complete76.8781 %Subject ←→ Query41.6717
NC_011751:3530954Escherichia coli UMN026 chromosome, complete genome76.8566 %Subject ←→ Query45.2956
NC_011149:2912219Salmonella enterica subsp. enterica serovar Agona str. SL483,76.7923 %Subject ←→ Query35.1509
NC_011080:25751Salmonella enterica subsp. enterica serovar Newport str. SL254,76.7433 %Subject ←→ Query32.396
NC_003198:25807Salmonella enterica subsp. enterica serovar Typhi str. CT18,76.7371 %Subject ←→ Query32.0738
NC_006511:25796Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC76.7371 %Subject ←→ Query31.098
NC_003198:1771432*Salmonella enterica subsp. enterica serovar Typhi str. CT18,76.7341 %Subject ←→ Query41.7074
NC_004631:25807Salmonella enterica subsp. enterica serovar Typhi Ty2, complete76.7279 %Subject ←→ Query31.3564
NC_012917:2786283Pectobacterium carotovorum subsp. carotovorum PC1, complete genome76.6912 %Subject ←→ Query35.3599
NC_011083:824659Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,76.6605 %Subject ←→ Query43.8662
NC_015663:2694373*Enterobacter aerogenes KCTC 2190 chromosome, complete genome76.636 %Subject ←→ Query42.4486
NC_003197:776238Salmonella typhimurium LT2, complete genome76.6085 %Subject ←→ Query42.7891
NC_011080:780850Salmonella enterica subsp. enterica serovar Newport str. SL254,76.6054 %Subject ←→ Query43.0958
NC_003198:751779Salmonella enterica subsp. enterica serovar Typhi str. CT18,76.5717 %Subject ←→ Query43.7973
NC_006905:1342474Salmonella enterica subsp. enterica serovar Choleraesuis str76.4951 %Subject ←→ Query39.1912
NC_010102:2322866Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,76.3634 %Subject ←→ Query41.9292
NC_004631:1182883*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete75.962 %Subject ←→ Query40.7346
NC_008258:3550500Shigella flexneri 5 str. 8401, complete genome75.7966 %Subject ←→ Query37.6694
CP002516:2395578Escherichia coli KO11, complete genome75.7966 %Subject ←→ Query32.4457
NC_004088:1851500*Yersinia pestis KIM, complete genome75.7138 %Subject ←→ Query31.1816
NC_011750:4490573Escherichia coli IAI39 chromosome, complete genome75.6526 %Subject ←→ Query39.857
NC_003197:1471349*Salmonella typhimurium LT2, complete genome75.5423 %Subject ←→ Query33.3672
NC_011751:4373961Escherichia coli UMN026 chromosome, complete genome75.53 %Subject ←→ Query40.8754
NC_010498:4166903Escherichia coli SMS-3-5, complete genome75.5024 %Subject ←→ Query41.3716
NC_002695:4678945Escherichia coli O157:H7 str. Sakai, complete genome75.3401 %Subject ←→ Query41.3618
NC_002655:4747926Escherichia coli O157:H7 EDL933, complete genome75.337 %Subject ←→ Query41.0615
NC_002655:1966464Escherichia coli O157:H7 EDL933, complete genome75.337 %Subject ←→ Query32.659
NC_006905:401154Salmonella enterica subsp. enterica serovar Choleraesuis str75.3094 %Subject ←→ Query32.1488
NC_011080:1470794Salmonella enterica subsp. enterica serovar Newport str. SL254,75.3064 %Subject ←→ Query34.1341
NC_010498:3988351*Escherichia coli SMS-3-5, complete genome75.1624 %Subject ←→ Query37.4019