Pre_GI: OUP Neighbours

Some Help

Query: NC_011083:1524337 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,

D: 31.3351

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a multidrug resistant strain. Salmonella enterica subsp. enterica serovar Heidelberg is one of the more common serovars causing disease in the USA. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 15




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Select all Donors or Recipients for Query Island



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_014366:478000*Gamma proteobacterium HdN1, complete genome76.4737 %Subject ←→ Query28.2485
NC_014334:99000*Lactobacillus casei str. Zhang chromosome, complete genome76.0601 %Subject ←→ Query29.7551
NC_013422:991500*Halothiobacillus neapolitanus c2, complete genome75.3891 %Subject ←→ Query30.9399
NC_012912:4167429Dickeya zeae Ech1591, complete genome75.098 %Subject ←→ Query30.9734
NC_004757:267165Nitrosomonas europaea ATCC 19718, complete genome75.7659 %Subject ←→ Query32.8561
NC_009792:1770106Citrobacter koseri ATCC BAA-895, complete genome75.1409 %Subject ←→ Query34.3637
NC_010814:3048441Geobacter lovleyi SZ, complete genome77.2426 %Subject ←→ Query37.9431
NC_007712:1219957Sodalis glossinidius str. 'morsitans', complete genome75.3064 %Subject ←→ Query39.2078
NC_011149:4677412Salmonella enterica subsp. enterica serovar Agona str. SL483,75.0123 %Subject ←→ Query39.2668
NC_007645:5160133Hahella chejuensis KCTC 2396, complete genome76.5686 %Subject Query41.8205
NC_015554:4724245*Alteromonas sp. SN2 chromosome, complete genome75.0674 %Subject Query42.0329
NC_009648:5119271*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome76.3909 %Subject Query45.1911
NC_008573:195317Shewanella sp. ANA-3 plasmid 1, complete sequence76.0662 %Subject Query46.5154
NC_013961:73037*Erwinia amylovora, complete genome75.8211 %Subject Query47.4059
NC_014562:2563466*Pantoea vagans C9-1 chromosome, complete genome75.0521 %Subject Query56.2301