Pre_GI: OUP Neighbours

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Query: NC_011080:2789744 Salmonella enterica subsp. enterica serovar Newport str. SL254,

D: 36.512

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 85




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_012912:4737703Dickeya zeae Ech1591, complete genome75.6556 %Subject ←→ Query29.5142
NC_015968:204969*Enterobacter asburiae LF7a chromosome, complete genome76.7708 %Subject ←→ Query30.2205
NC_012880:913698Dickeya dadantii Ech703, complete genome77.2947 %Subject ←→ Query30.49
NC_004631:2755306Salmonella enterica subsp. enterica serovar Typhi Ty2, complete77.7512 %Subject ←→ Query30.7575
NC_013282:646569Cronobacter turicensis, complete genome78.2782 %Subject ←→ Query30.8062
NC_015566:4205854*Serratia sp. AS12 chromosome, complete genome78.4926 %Subject ←→ Query30.8457
NC_003198:2769449Salmonella enterica subsp. enterica serovar Typhi str. CT18,77.7512 %Subject ←→ Query31.0494
NC_012912:2800884*Dickeya zeae Ech1591, complete genome76.0294 %Subject ←→ Query31.095
NC_012917:3378759Pectobacterium carotovorum subsp. carotovorum PC1, complete genome76.3603 %Subject ←→ Query31.1132
NC_012917:4328463Pectobacterium carotovorum subsp. carotovorum PC1, complete genome76.3327 %Subject ←→ Query31.405
NC_012912:1295653Dickeya zeae Ech1591, complete genome76.1581 %Subject ←→ Query31.554
NC_010067:171053Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete76.4737 %Subject ←→ Query31.5722
NC_015663:4447984Enterobacter aerogenes KCTC 2190 chromosome, complete genome76.4828 %Subject ←→ Query31.6444
NC_004631:283289*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete87.6348 %Subject ←→ Query31.6756
NC_013282:3719500*Cronobacter turicensis, complete genome78.9277 %Subject ←→ Query31.6817
NC_009832:4136878*Serratia proteamaculans 568, complete genome75.4075 %Subject ←→ Query31.9857
NC_010102:2881714Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,77.7665 %Subject ←→ Query32.0373
NC_014500:3519722Dickeya dadantii 3937 chromosome, complete genome75.7904 %Subject ←→ Query32.164
NC_012912:1229333Dickeya zeae Ech1591, complete genome77.9197 %Subject ←→ Query32.2592
NC_013716:1756545*Citrobacter rodentium ICC168, complete genome76.7433 %Subject ←→ Query33.4286
NC_012912:2285778Dickeya zeae Ech1591, complete genome76.7678 %Subject ←→ Query33.4887
NC_013282:116649*Cronobacter turicensis, complete genome77.7911 %Subject ←→ Query33.8673
NC_010102:283364*Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,86.5257 %Subject ←→ Query33.8947
NC_004547:3817656Erwinia carotovora subsp. atroseptica SCRI1043, complete genome77.0098 %Subject ←→ Query34.15
NC_013956:4579759Pantoea ananatis LMG 20103 chromosome, complete genome75.3431 %Subject ←→ Query34.8158
NC_013282:3962188*Cronobacter turicensis, complete genome79.0104 %Subject ←→ Query34.8164
NC_012779:3316877Edwardsiella ictaluri 93-146, complete genome78.6765 %Subject ←→ Query34.9445
NC_010694:3055403Erwinia tasmaniensis, complete genome75.0888 %Subject ←→ Query35.0644
NC_009778:1902995Enterobacter sakazakii ATCC BAA-894, complete genome75.9099 %Subject ←→ Query35.1593
NC_006511:4119332*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC82.8952 %Subject ←→ Query35.1897
NC_003198:3824187Salmonella enterica subsp. enterica serovar Typhi str. CT18,77.595 %Subject ←→ Query35.4207
NC_010694:614985Erwinia tasmaniensis, complete genome76.4154 %Subject ←→ Query35.5876
NC_003198:3586000*Salmonella enterica subsp. enterica serovar Typhi str. CT18,83.9491 %Subject ←→ Query35.6335
NC_010067:3753971Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete76.2408 %Subject ←→ Query35.7065
NC_006905:3942753Salmonella enterica subsp. enterica serovar Choleraesuis str78.9522 %Subject ←→ Query35.749
NC_010067:632683Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete77.7267 %Subject ←→ Query35.8098
NC_009832:1946401Serratia proteamaculans 568, complete genome75.4013 %Subject ←→ Query35.908
NC_004631:685357*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete79.519 %Subject ←→ Query36.1113
NC_004631:3809678Salmonella enterica subsp. enterica serovar Typhi Ty2, complete77.8891 %Subject ←→ Query36.1376
NC_010473:4256000*Escherichia coli str. K-12 substr. DH10B, complete genome79.4638 %Subject ←→ Query36.1868
NC_006511:682863*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC80.0888 %Subject ←→ Query36.3874
NC_003197:4005857Salmonella typhimurium LT2, complete genome77.3376 %Subject ←→ Query36.3904
NC_004431:1352906Escherichia coli CFT073, complete genome75.1746 %Subject ←→ Query36.4239
NC_011080:3976441Salmonella enterica subsp. enterica serovar Newport str. SL254,77.1232 %Subject ←→ Query36.5166
NC_012880:2778795Dickeya dadantii Ech703, complete genome76.2623 %Subject ←→ Query36.5333
NC_011149:361765Salmonella enterica subsp. enterica serovar Agona str. SL483,75.4994 %Subject ←→ Query36.5643
NC_000913:4159090*Escherichia coli K12, complete genome77.1783 %Subject ←→ Query36.6397
NC_009648:3720000*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome76.7034 %Subject ←→ Query36.7036
NC_009778:3454790Enterobacter sakazakii ATCC BAA-894, complete genome78.6336 %Subject ←→ Query36.7583
NC_011751:1377457Escherichia coli UMN026 chromosome, complete genome75.4381 %Subject ←→ Query36.813
NC_011080:383441Salmonella enterica subsp. enterica serovar Newport str. SL254,75.2788 %Subject ←→ Query37.0114
NC_008150:1420825*Yersinia pestis Antiqua, complete genome77.1109 %Subject ←→ Query37.0184
NC_005810:1794490*Yersinia pestis biovar Microtus str. 91001, complete genome76.8045 %Subject ←→ Query37.035
NC_003198:2297837Salmonella enterica subsp. enterica serovar Typhi str. CT18,78.3885 %Subject ←→ Query37.159
NC_010102:3955479Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,77.3101 %Subject ←→ Query37.2943
NC_003143:2137945*Yersinia pestis CO92, complete genome77.1844 %Subject ←→ Query37.3318
NC_006511:3794017Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC77.1415 %Subject ←→ Query37.3602
NC_011080:2342672Salmonella enterica subsp. enterica serovar Newport str. SL254,78.3149 %Subject ←→ Query37.4165
NC_009648:3476000Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome76.7034 %Subject ←→ Query37.4593
NC_014500:2934232*Dickeya dadantii 3937 chromosome, complete genome77.2825 %Subject ←→ Query37.5286
NC_006905:2355290Salmonella enterica subsp. enterica serovar Choleraesuis str78.5294 %Subject ←→ Query37.6094
NC_012779:3016327Edwardsiella ictaluri 93-146, complete genome75.962 %Subject ←→ Query37.6194
NC_011083:4020000Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,77.4326 %Subject ←→ Query37.6885
NC_014500:894136Dickeya dadantii 3937 chromosome, complete genome76.7126 %Subject ←→ Query37.8586
NC_011149:2040396Salmonella enterica subsp. enterica serovar Agona str. SL483,75.4626 %Subject ←→ Query37.9381
NC_014500:1646854*Dickeya dadantii 3937 chromosome, complete genome75.7751 %Subject ←→ Query37.9513
NC_011149:2294500Salmonella enterica subsp. enterica serovar Agona str. SL483,78.3027 %Subject ←→ Query38.0253
NC_011149:3930358Salmonella enterica subsp. enterica serovar Agona str. SL483,76.6942 %Subject ←→ Query38.0507
CU928160:4248621*Escherichia coli IAI1 chromosome, complete genome76.7188 %Subject ←→ Query38.0654
NC_010468:4455201*Escherichia coli ATCC 8739, complete genome79.6998 %Subject ←→ Query38.0958
NC_007645:6991163Hahella chejuensis KCTC 2396, complete genome75.0337 %Subject ←→ Query38.1445
NC_003198:2703013*Salmonella enterica subsp. enterica serovar Typhi str. CT18,94.7488 %Subject ←→ Query38.1505
NC_013716:4824541*Citrobacter rodentium ICC168, complete genome80.2175 %Subject ←→ Query38.2235
NC_006511:3364448*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC82.7788 %Subject ←→ Query38.4606
NC_013282:1256769Cronobacter turicensis, complete genome79.0165 %Subject ←→ Query38.8742
NC_006905:2805877*Salmonella enterica subsp. enterica serovar Choleraesuis str92.6746 %Subject ←→ Query39.786
NC_014121:1822895Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete75.0797 %Subject ←→ Query40.59
NC_013592:1424560Dickeya dadantii Ech586, complete genome75.8824 %Subject ←→ Query41.2418
NC_013282:3216226*Cronobacter turicensis, complete genome79.1391 %Subject ←→ Query41.2788
NC_007645:3870466Hahella chejuensis KCTC 2396, complete genome76.394 %Subject ←→ Query41.4216
NC_013283:113660Cronobacter turicensis plasmid pCTU1, complete sequence75.7659 %Subject ←→ Query42.151
NC_009648:293052*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome76.1826 %Subject ←→ Query43.5401
NC_014500:3175283Dickeya dadantii 3937 chromosome, complete genome76.0233 %Subject ←→ Query44.4588
NC_009778:3832000Enterobacter sakazakii ATCC BAA-894, complete genome75.6097 %Subject ←→ Query45.4902
NC_009648:1487692Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome76.3603 %Subject Query49.6231