Pre_GI: OUP Neighbours

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Query: NC_010610:861194 Lactobacillus fermentum IFO 3956, complete genome

D: 36.7806

Host Lineage: Lactobacillus fermentum; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. This probiotic species has been associated with active caries lesions.

Number of Neighbours: 39




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_015428:193817Lactobacillus buchneri NRRL B-30929 chromosome, complete genome79.0319 %Subject Query22.7687
NC_015697:116000*Lactobacillus reuteri SD2112 chromosome, complete genome75.9222 %Subject Query22.793
NC_015428:2019500*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome75.6771 %Subject Query23.2156
NC_015697:256000*Lactobacillus reuteri SD2112 chromosome, complete genome75.1593 %Subject Query23.2612
NC_014334:1039248Lactobacillus casei str. Zhang chromosome, complete genome75.671 %Subject Query24.0151
NC_014334:2696000Lactobacillus casei str. Zhang chromosome, complete genome76.6912 %Subject Query25.2128
NC_010080:1885677Lactobacillus helveticus DPC 4571, complete genome78.8205 %Subject Query25.9241
NC_010080:1911932Lactobacillus helveticus DPC 4571, complete genome79.7825 %Subject Query25.9336
NC_014334:369974Lactobacillus casei str. Zhang chromosome, complete genome76.4675 %Subject Query26.4531
NC_010999:2059738Lactobacillus casei, complete genome76.348 %Subject Query26.5655
NC_008497:1575884*Lactobacillus brevis ATCC 367, complete genome76.5196 %Subject ←→ Query26.8361
NC_010999:2483000Lactobacillus casei, complete genome75.2083 %Subject ←→ Query27.2718
NC_010999:2450974*Lactobacillus casei, complete genome76.9608 %Subject ←→ Query28.2344
NC_013199:1150000Lactobacillus rhamnosus Lc 705, complete genome75.6464 %Subject ←→ Query28.4351
NC_008526:74500*Lactobacillus casei ATCC 334, complete genome77.212 %Subject ←→ Query28.9383
NC_013199:1407742*Lactobacillus rhamnosus Lc 705, complete genome77.2243 %Subject ←→ Query29.5477
NC_010999:623489Lactobacillus casei, complete genome76.6115 %Subject ←→ Query29.8391
NC_013199:2386924Lactobacillus rhamnosus Lc 705, complete genome76.4706 %Subject ←→ Query30.5957
NC_013198:1030970*Lactobacillus rhamnosus GG, complete genome77.4724 %Subject ←→ Query30.8386
NC_010999:561914Lactobacillus casei, complete genome75.242 %Subject ←→ Query30.939
NC_015214:1458480Lactobacillus acidophilus 30SC chromosome, complete genome76.008 %Subject ←→ Query31.0242
NC_013198:394000*Lactobacillus rhamnosus GG, complete genome76.826 %Subject ←→ Query31.056
NC_008529:1133665Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete78.5999 %Subject ←→ Query31.098
NC_015428:1668465*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome76.8627 %Subject ←→ Query31.3716
NC_010999:1381497*Lactobacillus casei, complete genome76.538 %Subject ←→ Query31.3851
NC_013198:36829Lactobacillus rhamnosus GG, complete genome76.7341 %Subject ←→ Query31.5674
NC_015602:1949610Lactobacillus kefiranofaciens ZW3 chromosome, complete genome79.5221 %Subject ←→ Query31.6209
NC_008054:1117703*Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete78.1434 %Subject ←→ Query31.8215
NC_010999:2155714Lactobacillus casei, complete genome75.6036 %Subject ←→ Query31.9385
NC_013199:1966334*Lactobacillus rhamnosus Lc 705, complete genome78.0208 %Subject ←→ Query31.9404
NC_014727:889132Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,78.2629 %Subject ←→ Query32.2258
NC_014334:1954333Lactobacillus casei str. Zhang chromosome, complete genome75.4442 %Subject ←→ Query33.3293
NC_013199:2058857*Lactobacillus rhamnosus Lc 705, complete genome76.3756 %Subject ←→ Query33.7873
NC_008054:201075*Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete78.5876 %Subject ←→ Query34.2781
NC_013198:2088780*Lactobacillus rhamnosus GG, complete genome76.8382 %Subject ←→ Query35.0489
NC_010610:755000*Lactobacillus fermentum IFO 3956, complete genome75.6587 %Subject ←→ Query39.2062
NC_010610:1649500Lactobacillus fermentum IFO 3956, complete genome76.3909 %Subject ←→ Query39.2201
NC_010610:2013659Lactobacillus fermentum IFO 3956, complete genome75.1164 %Subject ←→ Query43.0803
NC_010610:795975Lactobacillus fermentum IFO 3956, complete genome76.3879 %Subject ←→ Query44.835