Pre_GI: OUP Neighbours

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Query: NC_010610:1580483 Lactobacillus fermentum IFO 3956, complete genome

D: 44.2348

Host Lineage: Lactobacillus fermentum; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. This probiotic species has been associated with active caries lesions.

Number of Neighbours: 168




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_002162:41797Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome75.2696 %Subject Query12.5953
NC_014222:473510*Methanococcus voltae A3 chromosome, complete genome75.1501 %Subject Query12.6429
NC_011025:361533*Mycoplasma arthritidis 158L3-1, complete genome76.2102 %Subject Query13.6825
NC_007930:50801Lactobacillus salivarius subsp. salivarius UCC118 plasmid pMP118,75.1164 %Subject Query15.0097
NC_007716:467235*Aster yellows witches'-broom phytoplasma AYWB, complete genome75.0031 %Subject Query15.8017
NC_004829:64000*Mycoplasma gallisepticum R, complete genome75.6036 %Subject Query16.3968
NC_016011:2875747Listeria ivanovii subsp. ivanovii PAM 55, complete genome77.3039 %Subject Query16.7194
NC_015759:1117122Weissella koreensis KACC 15510 chromosome, complete genome77.1415 %Subject Query16.9808
NC_013656:1549634Lactococcus lactis subsp. lactis KF147, complete genome75.242 %Subject Query17.1024
NC_011025:183287*Mycoplasma arthritidis 158L3-1, complete genome75.9589 %Subject Query17.4409
NC_014934:3786132Cellulophaga algicola DSM 14237 chromosome, complete genome75.1593 %Subject Query17.7104
NC_015420:35384Lactobacillus buchneri NRRL B-30929 plasmid pLBUC01, complete78.8695 %Subject Query17.7985
NC_016001:905164*Flavobacterium branchiophilum, complete genome75.1562 %Subject Query18.0995
NC_015759:667505Weissella koreensis KACC 15510 chromosome, complete genome79.4914 %Subject Query18.218
NC_002662:1042546Lactococcus lactis subsp. lactis Il1403, complete genome75.5607 %Subject Query18.3822
NC_005362:1289835Lactobacillus johnsonii NCC 533, complete genome75.7537 %Subject Query18.4643
NC_015759:726612*Weissella koreensis KACC 15510 chromosome, complete genome75.0306 %Subject Query18.7334
NC_005362:52848Lactobacillus johnsonii NCC 533, complete genome76.4491 %Subject Query19.1817
NC_014041:1395761Zunongwangia profunda SM-A87 chromosome, complete genome75.5699 %Subject Query19.2972
NC_004829:312750*Mycoplasma gallisepticum R, complete genome75.6618 %Subject Query19.3494
NC_015391:1551959Carnobacterium sp. 17-4 chromosome, complete genome76.0018 %Subject Query19.5647
NC_015144:900000Weeksella virosa DSM 16922 chromosome, complete genome75.867 %Subject Query19.6581
NC_015391:2099472Carnobacterium sp. 17-4 chromosome, complete genome76.0723 %Subject Query19.7896
NC_015391:2449927Carnobacterium sp. 17-4 chromosome, complete genome75.2145 %Subject Query19.9072
NC_015978:113656Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete79.5282 %Subject Query19.9386
NC_014934:3751612*Cellulophaga algicola DSM 14237 chromosome, complete genome75.2972 %Subject Query19.9724
NC_015391:1013608*Carnobacterium sp. 17-4 chromosome, complete genome75.5607 %Subject Query19.9781
NC_015759:760671*Weissella koreensis KACC 15510 chromosome, complete genome76.201 %Subject Query20.0163
NC_002973:505978Listeria monocytogenes str. 4b F2365, complete genome76.1642 %Subject Query20.1271
NC_006814:1538175Lactobacillus acidophilus NCFM, complete genome77.9994 %Subject Query20.5704
NC_015391:2059191*Carnobacterium sp. 17-4 chromosome, complete genome75.8517 %Subject Query20.7322
NC_015978:1266196*Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete81.5748 %Subject Query20.8603
NC_015846:2285017*Capnocytophaga canimorsus Cc5 chromosome, complete genome75.5147 %Subject Query20.8789
NC_016011:1419394Listeria ivanovii subsp. ivanovii PAM 55, complete genome75.4075 %Subject Query20.9326
NC_014259:2948335Acinetobacter sp. DR1 chromosome, complete genome76.0172 %Subject Query21.001
NC_009513:1184000*Lactobacillus reuteri F275, complete genome76.5993 %Subject Query21.0877
NC_010544:671431*Candidatus Phytoplasma australiense, complete genome75.2696 %Subject Query21.2885
NC_015978:32875Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete79.3566 %Subject Query21.308
NC_003997:3462497Bacillus anthracis str. Ames, complete genome75.0521 %Subject Query21.4312
NC_002973:72328*Listeria monocytogenes str. 4b F2365, complete genome75.4688 %Subject Query21.6136
NC_003210:870587Listeria monocytogenes EGD-e, complete genome75.4596 %Subject Query21.799
NC_013891:575746Listeria seeligeri serovar 1/2b str. SLCC3954, complete genome77.8002 %Subject Query21.9659
NC_009513:870837Lactobacillus reuteri F275, complete genome75.1654 %Subject Query22.0209
NC_003210:2879906*Listeria monocytogenes EGD-e, complete genome77.4694 %Subject Query22.1972
NC_002973:369650Listeria monocytogenes str. 4b F2365, complete genome75.6127 %Subject Query22.2033
NC_015428:21724Lactobacillus buchneri NRRL B-30929 chromosome, complete genome80.4197 %Subject Query22.2854
NC_015391:504227Carnobacterium sp. 17-4 chromosome, complete genome75.0919 %Subject Query22.3067
NC_013891:1861294*Listeria seeligeri serovar 1/2b str. SLCC3954, complete genome75.1562 %Subject Query22.3654
NC_003212:2837366Listeria innocua Clip11262, complete genome75.0061 %Subject Query22.3675
NC_015391:448833*Carnobacterium sp. 17-4 chromosome, complete genome76.8199 %Subject Query22.5119
NC_010184:3631891Bacillus weihenstephanensis KBAB4, complete genome75.3002 %Subject Query22.6958
NC_009727:1542000*Coxiella burnetii Dugway 7E9-12, complete genome75.0092 %Subject Query22.7322
NC_003210:2749538Listeria monocytogenes EGD-e, complete genome75.3646 %Subject Query22.7809
NC_015697:116000*Lactobacillus reuteri SD2112 chromosome, complete genome82.3529 %Subject Query22.793
NC_008525:606986Pediococcus pentosaceus ATCC 25745, complete genome81.3695 %Subject Query22.793
NC_003212:2293425Listeria innocua Clip11262, complete genome76.6667 %Subject Query22.8265
NC_014041:3197192Zunongwangia profunda SM-A87 chromosome, complete genome75.7935 %Subject Query22.8538
NC_007929:1463295*Lactobacillus salivarius subsp. salivarius UCC118, complete genome75.4534 %Subject Query22.8862
NC_004606:877707Streptococcus pyogenes SSI-1, complete genome75.1685 %Subject Query22.9025
NC_008525:1013979Pediococcus pentosaceus ATCC 25745, complete genome77.5245 %Subject Query22.945
NC_011527:1443076*Coxiella burnetii CbuG_Q212, complete genome75.527 %Subject Query23.1396
NC_008024:117241*Streptococcus pyogenes MGAS10750, complete genome75.3309 %Subject Query23.2065
NC_015428:2019500*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome75.7108 %Subject Query23.2156
NC_015697:256000*Lactobacillus reuteri SD2112 chromosome, complete genome80.8548 %Subject Query23.2612
NC_015978:412856*Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete79.0104 %Subject Query23.2933
NC_008525:780500Pediococcus pentosaceus ATCC 25745, complete genome76.8199 %Subject Query24.0776
NC_015978:352478*Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete79.8407 %Subject Query24.2022
NC_002973:461712Listeria monocytogenes str. 4b F2365, complete genome75.1226 %Subject Query24.3292
NC_005362:550823*Lactobacillus johnsonii NCC 533, complete genome75.7751 %Subject Query24.818
NC_009513:1065704*Lactobacillus reuteri F275, complete genome80.2911 %Subject Query24.8434
NC_012913:2074126Aggregatibacter aphrophilus NJ8700, complete genome75.864 %Subject Query24.9468
NC_007929:67810*Lactobacillus salivarius subsp. salivarius UCC118, complete genome75.3983 %Subject Query25.1229
NC_015846:1065692*Capnocytophaga canimorsus Cc5 chromosome, complete genome75.0153 %Subject Query25.1338
NC_007503:1047577Carboxydothermus hydrogenoformans Z-2901, complete genome75.2972 %Subject Query25.152
NC_008555:1874878*Listeria welshimeri serovar 6b str. SLCC5334, complete genome76.0723 %Subject Query25.1702
NC_003212:456214Listeria innocua Clip11262, complete genome76.5625 %Subject Query25.2446
NC_008530:1454118*Lactobacillus gasseri ATCC 33323, complete genome75.9559 %Subject Query25.3349
NC_004668:3053119*Enterococcus faecalis V583, complete genome77.0956 %Subject Query25.4317
NC_014106:244831Lactobacillus crispatus ST1, complete genome76.7494 %Subject Query25.6181
NC_014829:405104Bacillus cellulosilyticus DSM 2522 chromosome, complete genome75.769 %Subject Query25.6313
NC_015428:1544728*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome80.9589 %Subject Query25.6452
NC_015844:3159046Zobellia galactanivorans, complete genome75.8272 %Subject Query25.684
NC_007503:1680513*Carboxydothermus hydrogenoformans Z-2901, complete genome77.3315 %Subject Query25.7096
NC_010080:1911932Lactobacillus helveticus DPC 4571, complete genome77.212 %Subject Query25.9336
NC_015844:1188360*Zobellia galactanivorans, complete genome75.0092 %Subject Query26.5058
NC_014724:1731238*Lactobacillus amylovorus GRL 1112 chromosome, complete genome77.7022 %Subject Query26.547
NC_008525:1493317*Pediococcus pentosaceus ATCC 25745, complete genome79.3076 %Subject Query26.6901
NC_014472:3785319*Flavobacteriales bacterium HTCC2170 chromosome, complete genome75.337 %Subject Query26.6978
NC_004668:2938000*Enterococcus faecalis V583, complete genome79.1759 %Subject Query26.7423
NC_015428:1483768Lactobacillus buchneri NRRL B-30929 chromosome, complete genome76.1336 %Subject Query26.7814
NC_008497:1575884*Lactobacillus brevis ATCC 367, complete genome78.2874 %Subject Query26.8361
NC_009513:1363987*Lactobacillus reuteri F275, complete genome78.7623 %Subject Query26.8839
NC_000911:1358846Synechocystis sp. PCC 6803, complete genome75.4412 %Subject Query26.9429
NC_009513:303043*Lactobacillus reuteri F275, complete genome80.3217 %Subject Query27.0353
NC_011184:2369662*Vibrio fischeri MJ11 chromosome I, complete sequence75.2237 %Subject Query27.0599
NC_014655:570000Leadbetterella byssophila DSM 17132 chromosome, complete genome75.0643 %Subject Query27.061
NC_014472:2275254*Flavobacteriales bacterium HTCC2170 chromosome, complete genome75.2696 %Subject Query27.2412
NC_015601:436822*Erysipelothrix rhusiopathiae str. Fujisawa, complete genome75.4565 %Subject Query27.2486
NC_008530:469802*Lactobacillus gasseri ATCC 33323, complete genome76.5349 %Subject Query27.253
NC_006814:1618588*Lactobacillus acidophilus NCFM, complete genome78.364 %Subject Query27.2785
NC_015978:996933*Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete77.3774 %Subject Query27.3294
NC_012913:626449Aggregatibacter aphrophilus NJ8700, complete genome75.7537 %Subject Query27.3926
NC_010080:1685280*Lactobacillus helveticus DPC 4571, complete genome75.5239 %Subject Query27.4936
NC_008525:1202852*Pediococcus pentosaceus ATCC 25745, complete genome77.7512 %Subject Query27.6851
NC_006814:51500*Lactobacillus acidophilus NCFM, complete genome75.3646 %Subject Query27.6877
NC_012984:1027898Lactobacillus plantarum JDM1, complete genome75.3707 %Subject Query27.8362
NC_006814:403723*Lactobacillus acidophilus NCFM, complete genome76.6759 %Subject Query27.9291
NC_008525:561000Pediococcus pentosaceus ATCC 25745, complete genome80.1348 %Subject Query28.0034
NC_015846:790374*Capnocytophaga canimorsus Cc5 chromosome, complete genome75.6281 %Subject Query28.0104
NC_008525:270310*Pediococcus pentosaceus ATCC 25745, complete genome81.0233 %Subject Query28.0475
NC_014106:419511*Lactobacillus crispatus ST1, complete genome76.5686 %Subject Query28.0783
NC_012984:3077004Lactobacillus plantarum JDM1, complete genome77.405 %Subject Query28.2101
NC_008497:1111891*Lactobacillus brevis ATCC 367, complete genome76.345 %Subject Query28.4188
NC_008309:842072Haemophilus somnus 129PT, complete genome75.2941 %Subject Query28.533
NC_008309:190550Haemophilus somnus 129PT, complete genome76.2592 %Subject Query28.8791
NC_004668:2762464*Enterococcus faecalis V583, complete genome78.0453 %Subject Query28.9547
NC_015554:4266530Alteromonas sp. SN2 chromosome, complete genome75.3615 %Subject Query28.9929
NC_012984:2709148Lactobacillus plantarum JDM1, complete genome78.4804 %Subject Query29.0035
NC_015697:1295412*Lactobacillus reuteri SD2112 chromosome, complete genome79.5404 %Subject Query29.0596
NC_008505:36638*Lactococcus lactis subsp. cremoris SK11 plasmid 3, complete76.5993 %Subject Query29.065
NC_012984:520000Lactobacillus plantarum JDM1, complete genome75.7292 %Subject Query29.4929
NC_013895:1203000Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete75.7476 %Subject Query29.5055
NC_009053:1785447*Actinobacillus pleuropneumoniae L20, complete genome75.6219 %Subject Query29.5139
NC_013199:392450*Lactobacillus rhamnosus Lc 705, complete genome75.3248 %Subject Query29.6644
NC_012984:1074721Lactobacillus plantarum JDM1, complete genome78.7929 %Subject Query29.7281
NC_006582:883922*Bacillus clausii KSM-K16, complete genome75.3615 %Subject Query29.8372
NC_010999:623489Lactobacillus casei, complete genome75.7138 %Subject Query29.8391
NC_004567:1066710Lactobacillus plantarum WCFS1, complete genome76.9332 %Subject Query29.9854
NC_015214:1700000*Lactobacillus acidophilus 30SC chromosome, complete genome77.6869 %Subject Query30.2107
NC_004668:1010610*Enterococcus faecalis V583, complete genome76.8536 %Subject Query30.421
NC_009513:169146*Lactobacillus reuteri F275, complete genome80.2512 %Subject Query30.5164
NC_008526:565902Lactobacillus casei ATCC 334, complete genome77.0741 %Subject Query30.5707
NC_015602:1339067*Lactobacillus kefiranofaciens ZW3 chromosome, complete genome75.1777 %Subject Query30.661
NC_004668:3156247*Enterococcus faecalis V583, complete genome75.1072 %Subject Query30.8008
NC_015697:1480552*Lactobacillus reuteri SD2112 chromosome, complete genome77.5276 %Subject Query30.867
NC_004567:343500Lactobacillus plantarum WCFS1, complete genome78.3977 %Subject Query30.9556
NC_007576:1564739*Lactobacillus sakei subsp. sakei 23K, complete genome77.5184 %Subject Query31.0118
NC_015214:1458480Lactobacillus acidophilus 30SC chromosome, complete genome75.9865 %Subject Query31.0242
NC_014724:439594*Lactobacillus amylovorus GRL 1112 chromosome, complete genome78.8787 %Subject Query31.0692
NC_015697:742500*Lactobacillus reuteri SD2112 chromosome, complete genome81.057 %Subject Query31.0853
NC_004567:1089231Lactobacillus plantarum WCFS1, complete genome75.2114 %Subject Query31.1476
NC_015697:321311*Lactobacillus reuteri SD2112 chromosome, complete genome79.6354 %Subject Query31.9917
NC_008528:331260Oenococcus oeni PSU-1, complete genome77.2457 %Subject Query32.0829
NC_007576:471500*Lactobacillus sakei subsp. sakei 23K, complete genome79.6906 %Subject Query32.0931
NC_007576:299266*Lactobacillus sakei subsp. sakei 23K, complete genome79.1513 %Subject Query32.1055
NC_015697:1814128*Lactobacillus reuteri SD2112 chromosome, complete genome78.9277 %Subject Query32.1075
NC_014727:889132Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,77.5123 %Subject Query32.2258
NC_010611:3381500*Acinetobacter baumannii ACICU, complete genome75.481 %Subject Query32.3943
NC_010410:3719599*Acinetobacter baumannii AYE, complete genome75.4167 %Subject Query32.4692
NC_010611:208268*Acinetobacter baumannii ACICU, complete genome75.9896 %Subject Query32.4822
NC_015214:437733*Lactobacillus acidophilus 30SC chromosome, complete genome78.0637 %Subject Query32.6745
NC_015703:5013615Runella slithyformis DSM 19594 chromosome, complete genome76.9547 %Subject Query33.6671
NC_013199:2058857*Lactobacillus rhamnosus Lc 705, complete genome75.7353 %Subject Query33.7873
NC_015697:33665*Lactobacillus reuteri SD2112 chromosome, complete genome80.9743 %Subject Query33.9576
NC_008054:201075*Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete78.0147 %Subject ←→ Query34.2781
NC_015510:644500Haliscomenobacter hydrossis DSM 1100 chromosome, complete genome75.1777 %Subject ←→ Query34.3611
NC_008525:664500*Pediococcus pentosaceus ATCC 25745, complete genome78.845 %Subject ←→ Query34.8304
NC_013198:2088780*Lactobacillus rhamnosus GG, complete genome75.9283 %Subject ←→ Query35.0489
NC_007520:1627978*Thiomicrospira crunogena XCL-2, complete genome76.1428 %Subject ←→ Query35.293
NC_007576:435713*Lactobacillus sakei subsp. sakei 23K, complete genome78.3548 %Subject ←→ Query35.5911
NC_014727:1877764Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,76.011 %Subject ←→ Query37.472
NC_008054:1649160Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete76.1397 %Subject ←→ Query37.6607
NC_010610:755000*Lactobacillus fermentum IFO 3956, complete genome82.1814 %Subject ←→ Query39.2062
NC_010610:1649500Lactobacillus fermentum IFO 3956, complete genome76.0754 %Subject ←→ Query39.2201
NC_008529:1663000Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete77.9044 %Subject ←→ Query39.7277
NC_010610:2013659Lactobacillus fermentum IFO 3956, complete genome80.6036 %Subject ←→ Query43.0803
NC_013731:11605*Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence76.3358 %Subject ←→ Query43.3836
NC_010610:795975Lactobacillus fermentum IFO 3956, complete genome79.3995 %Subject ←→ Query44.835