Pre_GI: OUP Neighbours

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Query: NC_010610:107500 Lactobacillus fermentum IFO 3956, complete genome

D: 41.4381

Host Lineage: Lactobacillus fermentum; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. This probiotic species has been associated with active caries lesions.

Number of Neighbours: 10




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_008497:32160Lactobacillus brevis ATCC 367, complete genome77.0772 %Subject Query26.6719
NC_008497:79144*Lactobacillus brevis ATCC 367, complete genome75.3707 %Subject Query27.061
NC_008497:556365*Lactobacillus brevis ATCC 367, complete genome75.2788 %Subject Query27.4289
NC_008497:2038612*Lactobacillus brevis ATCC 367, complete genome76.1612 %Subject Query28.1022
NC_008525:108687*Pediococcus pentosaceus ATCC 25745, complete genome75.8517 %Subject Query30.0765
NC_007576:1854136*Lactobacillus sakei subsp. sakei 23K, complete genome77.6991 %Subject Query31.3415
NC_007576:1747662*Lactobacillus sakei subsp. sakei 23K, complete genome76.6575 %Subject ←→ Query32.1833
NC_008497:1498430*Lactobacillus brevis ATCC 367, complete genome76.1857 %Subject ←→ Query35.4937
NC_010610:1178430Lactobacillus fermentum IFO 3956, complete genome79.1728 %Subject ←→ Query41.4499
NC_010610:1385066*Lactobacillus fermentum IFO 3956, complete genome78.6795 %Subject ←→ Query43.1625