Pre_GI: OUP Neighbours

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Query: NC_010322:4623867 Pseudomonas putida GB-1 chromosome, complete genome

D: 29.0414

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

Number of Neighbours: 104

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_009482:156171*Synechococcus sp. RCC307 chromosome, complete genome76.6054 %Subject ←→ Query25.8627
NC_009482:1718000Synechococcus sp. RCC307 chromosome, complete genome79.7304 %Subject ←→ Query26.2561
NC_003450:1395565*Corynebacterium glutamicum ATCC 13032, complete genome77.8278 %Subject ←→ Query27.0599
NC_005071:1903581*Prochlorococcus marinus str. MIT 9313, complete genome76.3051 %Subject ←→ Query28.1584
NC_016642:1913432*Pseudovibrio sp. FO-BEG1 chromosome, complete genome76.2316 %Subject ←→ Query29.4018
NC_005773:4797242Pseudomonas syringae pv. phaseolicola 1448A, complete genome75.6219 %Subject ←→ Query30.7403
NC_008576:3307297*Magnetococcus sp. MC-1, complete genome77.1967 %Subject ←→ Query32.4052
NC_009342:1538000*Corynebacterium glutamicum R chromosome, complete genome77.9075 %Subject ←→ Query32.5428
NC_008738:1Marinobacter aquaeolei VT8 plasmid pMAQU01, complete sequence77.0404 %Subject ←→ Query32.8252
NC_008319:2172928Synechococcus sp. CC9311, complete genome79.087 %Subject ←→ Query32.9067
NC_008319:615135Synechococcus sp. CC9311, complete genome75.5423 %Subject ←→ Query33.2138
NC_008319:2471341*Synechococcus sp. CC9311, complete genome79.0104 %Subject ←→ Query33.2594
NC_011060:244949*Pelodictyon phaeoclathratiforme BU-1, complete genome75.0061 %Subject ←→ Query33.4691
NC_008319:1574908*Synechococcus sp. CC9311, complete genome75.2206 %Subject ←→ Query33.615
NC_008820:2268900Prochlorococcus marinus str. MIT 9303, complete genome75.1379 %Subject ←→ Query33.6181
NC_008319:1829571Synechococcus sp. CC9311, complete genome77.4908 %Subject ←→ Query34.3568
NC_006958:3240019*Corynebacterium glutamicum ATCC 13032, complete genome76.1887 %Subject ←→ Query34.4905
NC_008319:2335801*Synechococcus sp. CC9311, complete genome77.4571 %Subject ←→ Query35.4511
NC_008739:41793Marinobacter aquaeolei VT8 plasmid pMAQU02, complete sequence75.576 %Subject ←→ Query35.48
NC_009342:464210Corynebacterium glutamicum R chromosome, complete genome76.011 %Subject ←→ Query36.0452
NC_005773:1135374Pseudomonas syringae pv. phaseolicola 1448A, complete genome75.9467 %Subject ←→ Query37.2379
NC_008319:1727686Synechococcus sp. CC9311, complete genome76.2684 %Subject ←→ Query37.4747
NC_007513:1721359*Synechococcus sp. CC9902, complete genome75.8027 %Subject ←→ Query37.5521
NC_008319:1950889*Synechococcus sp. CC9311, complete genome79.1789 %Subject ←→ Query37.6604
NC_005070:1837051*Synechococcus sp. WH 8102, complete genome79.1575 %Subject ←→ Query38.0502
NC_008319:571821*Synechococcus sp. CC9311, complete genome78.1036 %Subject ←→ Query38.3888
NC_008319:262894Synechococcus sp. CC9311, complete genome78.6121 %Subject ←→ Query38.7636
NC_008576:2458573*Magnetococcus sp. MC-1, complete genome76.0784 %Subject Query39.1415
NC_007513:1807184Synechococcus sp. CC9902, complete genome80.527 %Subject Query39.4133
NC_009342:841500Corynebacterium glutamicum R chromosome, complete genome76.7157 %Subject Query39.6291
NC_008570:2216736*Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome78.7837 %Subject Query39.7209
NC_008319:2007752Synechococcus sp. CC9311, complete genome80.5208 %Subject Query39.7864
NC_007516:1561166Synechococcus sp. CC9605, complete genome78.7561 %Subject Query40.2364
NC_008319:635157*Synechococcus sp. CC9311, complete genome76.633 %Subject Query40.552
NC_007513:987969*Synechococcus sp. CC9902, complete genome75.432 %Subject Query40.8572
NC_007645:7136956*Hahella chejuensis KCTC 2396, complete genome75.1164 %Subject Query41.6568
NC_007513:513806*Synechococcus sp. CC9902, complete genome77.4265 %Subject Query41.7857
NC_007513:438438*Synechococcus sp. CC9902, complete genome77.9779 %Subject Query41.7874
NC_007516:413159*Synechococcus sp. CC9605, complete genome81.5962 %Subject Query42.2379
NC_007513:1900000*Synechococcus sp. CC9902, complete genome78.8358 %Subject Query42.3382
NC_007513:1503955*Synechococcus sp. CC9902, complete genome76.9884 %Subject Query42.4597
NC_007516:2037477*Synechococcus sp. CC9605, complete genome79.2708 %Subject Query42.4873
NC_005070:2181000Synechococcus sp. WH 8102, complete genome76.0018 %Subject Query42.7584
NC_008319:136863Synechococcus sp. CC9311, complete genome78.3211 %Subject Query43.0087
NC_007513:632884*Synechococcus sp. CC9902, complete genome77.4724 %Subject Query43.2321
NC_015424:3520783Aeromonas veronii B565 chromosome, complete genome75.3002 %Subject Query43.6942
NC_005070:1898612Synechococcus sp. WH 8102, complete genome78.8082 %Subject Query43.7164
NC_005070:1486496Synechococcus sp. WH 8102, complete genome75.9375 %Subject Query45.9664
NC_007516:1439537*Synechococcus sp. CC9605, complete genome78.5447 %Subject Query47.9752
NC_007516:1086948*Synechococcus sp. CC9605, complete genome75.9038 %Subject Query48.4699
NC_007516:2277910*Synechococcus sp. CC9605, complete genome80.8824 %Subject Query50.5095
NC_007516:774489*Synechococcus sp. CC9605, complete genome75.5944 %Subject Query55.3327