Pre_GI: OUP Neighbours

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Query: NC_009727:1177390 Coxiella burnetii Dugway 7E9-12, complete genome

D: 23.0788

Host Lineage: Coxiella burnetii; Coxiella; Coxiellaceae; Legionellales; Proteobacteria; Bacteria

General Information: Coxiella burnetii Dugway 5J108-111 was isolated from rodents in Utah, USA. This organism is widely distributed in nature and can cause infections in reptiles, birds, and mammals. It causes Q fever, or 'query' fever, an atypical pneumonia first associated with abattoir workers in Australia. Transmission may be through insect vectors such as ticks that have bitten an infected wild or domesticated animal, or through an aerosol produced by domesticated animals such as sheep or cattle. The presence of a plasmid is believed to be associated with virulence and pathogenicity, however C. burnetii isolates containing plasmid QpDG are avirulent in guinea pigs and plasmidless isolates have been associated with endocarditis in humans. Coxiella burnetii has a developmental life cycle, and can grow vegetatively through binary fission, or asymmetrically and produce a spore-like cell. The spore-like cell may enable the organism to exist extracellularly for small amounts of time. This bacterium is an obligate intracellular pathogen. It is endocytosed by a host cell, a macrophage for example, and lives and replicates inside the phagolysozome, a unique property of this organism. The genome encodes proteins that have a higher than average pI, which may enable adaptation to the acidic environment of the phagolysozome. The chromosome also contains genes for a number of detoxification and stress response proteins such as dismutases that allow growth in the oxidative environment. The type IV system is similar to the one found in Legionella, which may be important for intracellular survival. This organism produces numerous ankyrin-repeat proteins that may be involved in interactions with the host cell. The genome has 83 pseudogenes, which may be a result of the typical genome-wide degradation observed with other intracellular organisms and also has a group I intron in the 23S ribosomal RNA gene.

Number of Neighbours: 116

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_005861:695130Candidatus Protochlamydia amoebophila UWE25, complete genome76.1826 %Subject ←→ Query17.0679
NC_008508:1382036Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1,76.0907 %Subject ←→ Query17.8569
NC_008510:1339926Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1,75.8395 %Subject ←→ Query17.8979
NC_005861:1027000*Candidatus Protochlamydia amoebophila UWE25, complete genome75.1471 %Subject ←→ Query18.6223
NC_009727:1001203*Coxiella burnetii Dugway 7E9-12, complete genome80.2574 %Subject ←→ Query21.1029
NC_011527:953442*Coxiella burnetii CbuG_Q212, complete genome81.0049 %Subject ←→ Query21.4555
NC_009727:766000*Coxiella burnetii Dugway 7E9-12, complete genome79.856 %Subject ←→ Query21.7504
NC_011527:1113217Coxiella burnetii CbuG_Q212, complete genome79.9908 %Subject ←→ Query22.3158
NC_011528:767940*Coxiella burnetii CbuK_Q154, complete genome80.0368 %Subject ←→ Query22.4009
NC_005861:2120633Candidatus Protochlamydia amoebophila UWE25, complete genome77.7574 %Subject ←→ Query22.6855
NC_009727:1542000*Coxiella burnetii Dugway 7E9-12, complete genome80.1379 %Subject ←→ Query22.7322
NC_010117:980313Coxiella burnetii RSA 331, complete genome79.8866 %Subject ←→ Query22.8964
NC_009727:1899876*Coxiella burnetii Dugway 7E9-12, complete genome75.6801 %Subject ←→ Query23.0605
NC_002971:780502Coxiella burnetii RSA 493, complete genome80.6342 %Subject ←→ Query23.0652
NC_011527:1443076*Coxiella burnetii CbuG_Q212, complete genome78.6887 %Subject ←→ Query23.1396
NC_011528:647401Coxiella burnetii CbuK_Q154, complete genome80.2053 %Subject ←→ Query23.1688
NC_006300:1624254*Mannheimia succiniciproducens MBEL55E, complete genome76.78 %Subject ←→ Query23.223
NC_009727:670616Coxiella burnetii Dugway 7E9-12, complete genome75.723 %Subject ←→ Query23.2673
NC_002971:619355Coxiella burnetii RSA 493, complete genome77.0067 %Subject ←→ Query23.2807
NC_010117:700112Coxiella burnetii RSA 331, complete genome77.117 %Subject ←→ Query23.7977
NC_011527:1255998Coxiella burnetii CbuG_Q212, complete genome77.1324 %Subject ←→ Query23.804
NC_011528:1282691*Coxiella burnetii CbuK_Q154, complete genome78.367 %Subject ←→ Query23.9948
NC_009727:357206*Coxiella burnetii Dugway 7E9-12, complete genome84.0564 %Subject ←→ Query24.1054
NC_015713:1594114*Simkania negevensis Z chromosome gsn.131, complete genome75.0797 %Subject ←→ Query24.3251
NC_004193:3434015Oceanobacillus iheyensis HTE831, complete genome75.867 %Subject ←→ Query24.3274
NC_014657:2127500Caldicellulosiruptor owensensis OL chromosome, complete genome75.4013 %Subject ←→ Query24.4483
NC_011528:1769349*Coxiella burnetii CbuK_Q154, complete genome80.1899 %Subject ←→ Query24.6589
NC_011026:1181940Chloroherpeton thalassium ATCC 35110, complete genome75.4442 %Subject ←→ Query24.8017
NC_002971:1545924*Coxiella burnetii RSA 493, complete genome80.3278 %Subject ←→ Query24.9297
NC_010117:1633447*Coxiella burnetii RSA 331, complete genome80.2053 %Subject ←→ Query25.1409
NC_015497:3497680Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genome75.5729 %Subject ←→ Query25.5502
NC_007520:407627Thiomicrospira crunogena XCL-2, complete genome75.3738 %Subject ←→ Query25.8025
NC_015660:3643370Geobacillus thermoglucosidasius C56-YS93 chromosome, complete77.7022 %Subject ←→ Query25.9515
NC_010939:1986263*Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete75.7138 %Subject ←→ Query26.8824
NC_009513:1363987*Lactobacillus reuteri F275, complete genome75.1716 %Subject ←→ Query26.8839
NC_014916:22644Geobacillus sp. Y412MC52 plasmid pGYMC5201, complete sequence76.9485 %Subject ←→ Query26.9425
NC_013412:33834Geobacillus sp. Y412MC61 plasmid pGYMC6101, complete sequence77.1324 %Subject ←→ Query26.9638
NC_006582:2205154Bacillus clausii KSM-K16, complete genome75.0184 %Subject ←→ Query26.9729
NC_015660:3174424Geobacillus thermoglucosidasius C56-YS93 chromosome, complete76.6544 %Subject ←→ Query27.2809
NC_015660:1076159Geobacillus thermoglucosidasius C56-YS93 chromosome, complete78.3425 %Subject ←→ Query27.3103
NC_013161:3448966*Cyanothece sp. PCC 8802, complete genome75.0735 %Subject ←→ Query27.3207
NC_006582:3827844Bacillus clausii KSM-K16, complete genome75.6587 %Subject ←→ Query27.3346
NC_015660:1896904Geobacillus thermoglucosidasius C56-YS93 chromosome, complete75.7812 %Subject ←→ Query27.3869
NC_015660:487506Geobacillus thermoglucosidasius C56-YS93 chromosome, complete78.4252 %Subject ←→ Query27.583
NC_009053:553298*Actinobacillus pleuropneumoniae L20, complete genome76.0509 %Subject ←→ Query27.7268
NC_015660:3328595Geobacillus thermoglucosidasius C56-YS93 chromosome, complete77.0343 %Subject ←→ Query28.0701
NC_012793:383612*Geobacillus sp. WCH70, complete genome77.9197 %Subject ←→ Query28.1218
NC_010939:1809446*Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete76.2347 %Subject ←→ Query28.1766
NC_012793:3275751*Geobacillus sp. WCH70, complete genome79.0074 %Subject ←→ Query28.4508
NC_010939:405477*Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete76.4645 %Subject ←→ Query28.4796
NC_016047:2631511*Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, complete75.0858 %Subject ←→ Query28.7208
NC_015660:391627*Geobacillus thermoglucosidasius C56-YS93 chromosome, complete77.7574 %Subject ←→ Query28.9358
NC_015660:3467579*Geobacillus thermoglucosidasius C56-YS93 chromosome, complete76.7065 %Subject ←→ Query28.9622
NC_014762:2428721*Sulfuricurvum kujiense DSM 16994 chromosome, complete genome75.2267 %Subject ←→ Query28.964
NC_015660:3518931Geobacillus thermoglucosidasius C56-YS93 chromosome, complete79.6048 %Subject ←→ Query29.0471
NC_015660:1918307*Geobacillus thermoglucosidasius C56-YS93 chromosome, complete75.8211 %Subject ←→ Query29.0695
NC_012793:3096095Geobacillus sp. WCH70, complete genome77.1691 %Subject ←→ Query29.7031
NC_015633:2565753*Vibrio anguillarum 775 chromosome chromosome I, complete sequence75.046 %Subject ←→ Query29.7101
NC_011026:1284966*Chloroherpeton thalassium ATCC 35110, complete genome77.0496 %Subject ←→ Query29.7452
NC_007514:335085*Chlorobium chlorochromatii CaD3, complete genome75.2635 %Subject ←→ Query29.799
NC_013960:3379515*Nitrosococcus halophilus Nc4 chromosome, complete genome76.152 %Subject ←→ Query29.9763
NC_000964:649781Bacillus subtilis subsp. subtilis str. 168, complete genome76.1581 %Subject ←→ Query30.1775
NC_014976:3469395*Bacillus subtilis BSn5 chromosome, complete genome75.1746 %Subject ←→ Query30.4023
NC_015731:3274739*Nitrosomonas sp. Is79A3 chromosome, complete genome75.337 %Subject ←→ Query30.5469
NC_004668:3156247*Enterococcus faecalis V583, complete genome75.5484 %Subject ←→ Query30.8008
NC_010161:2050816*Bartonella tribocorum CIP 105476, complete genome77.5123 %Subject ←→ Query30.8044
NC_012846:1888000*Bartonella grahamii as4aup, complete genome76.1305 %Subject ←→ Query30.8764
NC_015660:296488Geobacillus thermoglucosidasius C56-YS93 chromosome, complete75.7506 %Subject ←→ Query31.3239
NC_011830:4951716Desulfitobacterium hafniense DCB-2, complete genome75.3064 %Subject ←→ Query31.6622
NC_010794:1476494*Methylacidiphilum infernorum V4, complete genome77.6226 %Subject ←→ Query31.683
NC_000964:1873398Bacillus subtilis subsp. subtilis str. 168, complete genome75.2911 %Subject ←→ Query31.6844
NC_011026:3009500*Chloroherpeton thalassium ATCC 35110, complete genome80.5116 %Subject ←→ Query31.8736
NC_006582:1297039Bacillus clausii KSM-K16, complete genome76.1091 %Subject ←→ Query31.8931
NC_011026:2533017*Chloroherpeton thalassium ATCC 35110, complete genome79.1176 %Subject ←→ Query31.9226
NC_012985:1191125Candidatus Liberibacter asiaticus str. psy62, complete genome75.8119 %Subject ←→ Query31.9754
NC_015697:321311*Lactobacillus reuteri SD2112 chromosome, complete genome75.0582 %Subject ←→ Query31.9917
NC_010161:1844452*Bartonella tribocorum CIP 105476, complete genome75.6158 %Subject ←→ Query32.1046
NC_014479:3939183*Bacillus subtilis subsp. spizizenii str. W23 chromosome, complete75.6311 %Subject ←→ Query32.3217
NC_011026:2450325Chloroherpeton thalassium ATCC 35110, complete genome75.2482 %Subject ←→ Query32.4678
NC_002570:207555*Bacillus halodurans C-125, complete genome75.481 %Subject ←→ Query32.4842
NC_016047:4108910Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, complete75.5024 %Subject ←→ Query32.807
NC_013895:605488*Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete75.7567 %Subject ←→ Query32.8408
NC_005139:2201820*Vibrio vulnificus YJ016 chromosome I, complete sequence75.3278 %Subject ←→ Query33.0058
NC_012914:1923500Paenibacillus sp. JDR-2, complete genome78.5172 %Subject Query33.2254
NC_012914:5194791Paenibacillus sp. JDR-2, complete genome78.5723 %Subject Query33.2273
NC_011026:2269986*Chloroherpeton thalassium ATCC 35110, complete genome78.3088 %Subject Query33.5605
NC_014551:2510000*Bacillus amyloliquefaciens DSM 7, complete genome75.2604 %Subject Query33.5634
NC_006582:3949832Bacillus clausii KSM-K16, complete genome75.6373 %Subject Query33.8347
NC_013421:1819036Pectobacterium wasabiae WPP163, complete genome76.1244 %Subject Query34.0279
NC_016023:2163000*Bacillus coagulans 36D1 chromosome, complete genome75.7047 %Subject Query34.5001
NC_015277:380624*Sphingobacterium sp. 21 chromosome, complete genome76.6207 %Subject Query34.9495
NC_014551:3864127Bacillus amyloliquefaciens DSM 7, complete genome75.4963 %Subject Query35.3295
NC_012491:743883*Brevibacillus brevis NBRC 100599, complete genome75.5147 %Subject Query35.5725
NC_015277:689519*Sphingobacterium sp. 21 chromosome, complete genome76.2224 %Subject Query35.7416
NC_006322:567987*Bacillus licheniformis ATCC 14580, complete genome75.8517 %Subject Query35.8713
NC_012997:2405500*Teredinibacter turnerae T7901, complete genome75.2237 %Subject Query36.1474
NC_006510:3321426Geobacillus kaustophilus HTA426, complete genome77.5521 %Subject Query36.1711
NC_011830:1288984Desulfitobacterium hafniense DCB-2, complete genome76.8597 %Subject Query36.5143
NC_007907:960104*Desulfitobacterium hafniense Y51, complete genome76.4246 %Subject Query36.8442
NC_006322:203932*Bacillus licheniformis ATCC 14580, complete genome76.9914 %Subject Query37.4168
NC_012997:4545875Teredinibacter turnerae T7901, complete genome75.3431 %Subject Query37.5301
NC_014377:1943476Thermosediminibacter oceani DSM 16646 chromosome, complete genome75.4167 %Subject Query37.9103
NC_006322:4149500*Bacillus licheniformis ATCC 14580, complete genome77.356 %Subject Query38.2051
NC_015277:3351504*Sphingobacterium sp. 21 chromosome, complete genome76.2439 %Subject Query38.8988
NC_007912:231817Saccharophagus degradans 2-40, complete genome77.0312 %Subject Query39.234
NC_013406:3672857Paenibacillus sp. Y412MC10 chromosome, complete genome75.8793 %Subject Query39.5404
NC_012914:5618000Paenibacillus sp. JDR-2, complete genome77.4234 %Subject Query39.6612
NC_006510:887545Geobacillus kaustophilus HTA426, complete genome75.1532 %Subject Query40.5733
NC_013406:1217385Paenibacillus sp. Y412MC10 chromosome, complete genome76.6146 %Subject Query40.6606
NC_015277:6213304*Sphingobacterium sp. 21 chromosome, complete genome78.0453 %Subject Query41.8101
NC_006510:591339Geobacillus kaustophilus HTA426, complete genome75.8793 %Subject Query42.2291
NC_012914:5225609*Paenibacillus sp. JDR-2, complete genome76.3205 %Subject Query44.0437
NC_014364:394899Spirochaeta smaragdinae DSM 11293 chromosome, complete genome75.098 %Subject Query44.1589
NC_006905:4638707*Salmonella enterica subsp. enterica serovar Choleraesuis str76.2071 %Subject Query45.4121
NC_004547:1174650*Erwinia carotovora subsp. atroseptica SCRI1043, complete genome75.1654 %Subject Query48.0379
NC_013406:2866000*Paenibacillus sp. Y412MC10 chromosome, complete genome75.4473 %Subject Query50.1139