Pre_GI: OUP Neighbours

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Query: NC_009708:372422 Yersinia pseudotuberculosis IP 31758 chromosome, complete genome

D: 33.1886

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is serotype 1b and was isolated in 1966 from the stools of a patient presenting with scarlet-like fever in the Primorski region of the former USSR. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.

Number of Neighbours: 356




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_009792:808332Citrobacter koseri ATCC BAA-895, complete genome76.777 %Subject ←→ Query35.0274
NC_013716:4824541*Citrobacter rodentium ICC168, complete genome75.8793 %Subject ←→ Query38.2235
NC_020260:312805Cronobacter sakazakii Sp291, complete genome75.6066 %Subject ←→ Query38.5624
NC_013283:113660Cronobacter turicensis plasmid pCTU1, complete sequence75.7476 %Subject ←→ Query42.151
NC_013592:2160000Dickeya dadantii Ech586, complete genome75.7751 %Subject ←→ Query33.4874
NC_013592:1424560Dickeya dadantii Ech586, complete genome79.6906 %Subject ←→ Query41.2418
NC_012912:325913Dickeya zeae Ech1591, complete genome75.386 %Subject ←→ Query32.3565
NC_012912:2285778Dickeya zeae Ech1591, complete genome75.6801 %Subject ←→ Query33.4887
NC_012912:647369Dickeya zeae Ech1591, complete genome76.1305 %Subject ←→ Query37.7391
NC_012779:305969Edwardsiella ictaluri 93-146, complete genome76.0815 %Subject ←→ Query39.836
NC_012779:2928000*Edwardsiella ictaluri 93-146, complete genome75.8487 %Subject ←→ Query41.5453
NC_012779:2424967*Edwardsiella ictaluri 93-146, complete genome76.1765 %Subject ←→ Query35.992
NC_012779:996879Edwardsiella ictaluri 93-146, complete genome75.3186 %Subject ←→ Query39.7678
NC_012779:2281700*Edwardsiella ictaluri 93-146, complete genome77.2089 %Subject ←→ Query40.1776
NC_012779:957558Edwardsiella ictaluri 93-146, complete genome75.0674 %Subject ←→ Query38.2879
NC_012779:2064582Edwardsiella ictaluri 93-146, complete genome76.6207 %Subject ←→ Query37.0151
NC_012779:3316877Edwardsiella ictaluri 93-146, complete genome79.3536 %Subject ←→ Query34.9445
NC_012779:3176820*Edwardsiella ictaluri 93-146, complete genome77.8585 %Subject ←→ Query39.7546
NC_013508:876431*Edwardsiella tarda EIB202, complete genome75.3646 %Subject ←→ Query41.7282
NC_020181:1317647Enterobacter aerogenes EA1509E, complete genome75.2451 %Subject ←→ Query30.5022
NC_015663:1902344*Enterobacter aerogenes KCTC 2190 chromosome, complete genome75.6587 %Subject ←→ Query31.1284
NC_015968:2195645Enterobacter asburiae LF7a chromosome, complete genome77.0343 %Subject ←→ Query33.0849
NC_016514:2334870Enterobacter cloacae EcWSU1 chromosome, complete genome77.742 %Subject ←→ Query34.7464
NC_016514:1627664*Enterobacter cloacae EcWSU1 chromosome, complete genome76.0999 %Subject ←→ Query41.7029
NC_014618:4312295*Enterobacter cloacae SCF1 chromosome, complete genome76.1244 %Subject ←→ Query35.071
NC_014121:1038554Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete76.9792 %Subject ←→ Query34.8127
NC_014121:1822895Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete77.4724 %Subject ←→ Query40.59
NC_009436:203365*Enterobacter sp. 638, complete genome76.8107 %Subject ←→ Query32.0221
NC_020063:2077233Enterobacteriaceae bacterium strain FGI 57, complete genome76.8382 %Subject ←→ Query37.7941
NC_013971:666730Erwinia amylovora ATCC 49946 chromosome, complete genome78.5172 %Subject ←→ Query31.4537
NC_013961:3083816Erwinia amylovora, complete genome77.2641 %Subject ←→ Query36.2172
NC_004547:3817656Erwinia carotovora subsp. atroseptica SCRI1043, complete genome75.4657 %Subject ←→ Query34.15
NC_010694:962383Erwinia tasmaniensis, complete genome76.2837 %Subject ←→ Query30.0928
NC_010694:3055403Erwinia tasmaniensis, complete genome78.079 %Subject ←→ Query35.0644
NC_008563:3119284Escherichia coli APEC O1, complete genome78.5018 %Subject ←→ Query31.9127
NC_004431:1352906Escherichia coli CFT073, complete genome76.0049 %Subject ←→ Query36.4239
NC_011745:1055354*Escherichia coli ED1a chromosome, complete genome76.011 %Subject ←→ Query30.2164
NC_011750:2009889Escherichia coli IAI39 chromosome, complete genome75.0429 %Subject ←→ Query39.0625
NC_011750:1931384Escherichia coli IAI39 chromosome, complete genome76.8352 %Subject ←→ Query37.6581
AP010958:1472506Escherichia coli O103:H2 str. 12009 DNA, complete genome75.674 %Subject ←→ Query36.7127
NC_013353:1472506Escherichia coli O103:H2 str. 12009, complete genome75.674 %Subject ←→ Query36.7127
NC_013364:2522888Escherichia coli O111:H- str. 11128, complete genome77.6195 %Subject ←→ Query34.9313
NC_011601:756885Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome77.9657 %Subject ←→ Query35.8585
NC_011601:1077548Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome76.4246 %Subject ←→ Query36.1989
NC_002655:1909139Escherichia coli O157:H7 EDL933, complete genome76.4369 %Subject ←→ Query38.4667
NC_011353:1195179*Escherichia coli O157:H7 str. EC4115 chromosome, complete genome75.3094 %Subject ←→ Query36.9832
NC_011353:921500Escherichia coli O157:H7 str. EC4115 chromosome, complete genome76.5656 %Subject ←→ Query34.5194
NC_011353:1761977Escherichia coli O157:H7 str. EC4115 chromosome, complete genome76.3358 %Subject ←→ Query38.5032
NC_002695:2893951Escherichia coli O157:H7 str. Sakai, complete genome76.4308 %Subject ←→ Query37.275
NC_002695:2158314Escherichia coli O157:H7 str. Sakai, complete genome75.0643 %Subject ←→ Query36.4725
NC_013008:2889743Escherichia coli O157:H7 str. TW14359 chromosome, complete genome75.5974 %Subject ←→ Query37.196
NC_013008:1761165Escherichia coli O157:H7 str. TW14359 chromosome, complete genome76.5656 %Subject ←→ Query38.2113
NC_013361:1896446Escherichia coli O26:H11 str. 11368 chromosome, complete genome75.6281 %Subject ←→ Query38.2296
NC_013361:2169948Escherichia coli O26:H11 str. 11368 chromosome, complete genome75.6955 %Subject ←→ Query37.7614
NC_013941:2425233Escherichia coli O55:H7 str. CB9615 chromosome, complete genome77.4357 %Subject ←→ Query36.1047
NC_013941:1963523Escherichia coli O55:H7 str. CB9615 chromosome, complete genome77.3713 %Subject ←→ Query36.9893
NC_013941:1014386Escherichia coli O55:H7 str. CB9615 chromosome, complete genome76.682 %Subject ←→ Query33.1965
NC_011742:585908Escherichia coli S88 chromosome, complete genome75.7629 %Subject ←→ Query38.828
NC_011751:1377457Escherichia coli UMN026 chromosome, complete genome75.3431 %Subject ←→ Query36.813
NC_016612:5600177Klebsiella oxytoca KCTC 1686 chromosome, complete genome76.6054 %Subject ←→ Query36.4903
NC_016612:477407*Klebsiella oxytoca KCTC 1686 chromosome, complete genome75.4381 %Subject ←→ Query38.8808
NC_016612:2902628Klebsiella oxytoca KCTC 1686 chromosome, complete genome75.4167 %Subject ←→ Query34.5503
NC_011283:942594Klebsiella pneumoniae 342 chromosome, complete genome80.1746 %Subject ←→ Query33.3475
NC_011283:2103500*Klebsiella pneumoniae 342 chromosome, complete genome77.0221 %Subject ←→ Query42.41
NC_011283:1901229*Klebsiella pneumoniae 342 chromosome, complete genome76.1366 %Subject Query49.5744
NC_012731:3193880*Klebsiella pneumoniae NTUH-K2044 chromosome, complete genome77.549 %Subject ←→ Query36.6801
NC_012731:2302974Klebsiella pneumoniae NTUH-K2044 chromosome, complete genome76.973 %Subject ←→ Query43.1245
NC_012731:3411161Klebsiella pneumoniae NTUH-K2044 chromosome, complete genome75.5576 %Subject Query45.3389
NC_016845:1773416Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,77.5153 %Subject ←→ Query41.6817
NC_016845:4539381Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,75.818 %Subject Query47.6272
NC_016845:3448881*Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,77.9534 %Subject ←→ Query33.8626
NC_016845:3238507*Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,79.4087 %Subject ←→ Query36.3698
NC_016845:2306744Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,76.9853 %Subject ←→ Query32.8773
NC_009648:3476000Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome78.7806 %Subject ←→ Query37.4593
NC_009648:2465613*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome78.8266 %Subject Query50.7802
NC_009648:1487692Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome77.1875 %Subject Query49.6231
NC_013956:4579759Pantoea ananatis LMG 20103 chromosome, complete genome76.3909 %Subject ←→ Query34.8158
NC_013421:2720500Pectobacterium wasabiae WPP163, complete genome76.2316 %Subject ←→ Query34.6251
NC_012962:3568046Photorhabdus asymbiotica, complete genome78.2138 %Subject ←→ Query37.813
NC_016818:1963875Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, complete78.7286 %Subject ←→ Query31.9066
NC_016818:2542295*Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, complete76.1029 %Subject ←→ Query40.8603
NC_016835:405482Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,75.8395 %Subject ←→ Query28.7087
NC_017047:2260118Rahnella aquatilis HX2 chromosome, complete genome75.6434 %Subject Query43.6923
NC_017060:125480Rahnella aquatilis HX2 plasmid PRA1, complete sequence77.4295 %Subject ←→ Query36.427
NC_021066:3769405Raoultella ornithinolytica B6, complete genome76.3542 %Subject ←→ Query35.3093
NC_021066:2197490Raoultella ornithinolytica B6, complete genome76.9118 %Subject ←→ Query32.7666
NC_021066:4906239*Raoultella ornithinolytica B6, complete genome75.5515 %Subject ←→ Query33.9745
NC_015761:3698520Salmonella bongori NCTC 12419, complete genome77.5858 %Subject ←→ Query39.3908
NC_015761:2227500Salmonella bongori NCTC 12419, complete genome76.6605 %Subject ←→ Query42.5785
NC_010067:3753971Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete77.4479 %Subject ←→ Query35.7065
NC_011149:3930358Salmonella enterica subsp. enterica serovar Agona str. SL483,75.0766 %Subject ←→ Query38.0507
NC_011149:2294500Salmonella enterica subsp. enterica serovar Agona str. SL483,76.3051 %Subject ←→ Query38.0253
NC_011149:2040396Salmonella enterica subsp. enterica serovar Agona str. SL483,76.1887 %Subject ←→ Query37.9381
NC_006905:3942753Salmonella enterica subsp. enterica serovar Choleraesuis str76.1366 %Subject ←→ Query35.749
NC_006905:2355290Salmonella enterica subsp. enterica serovar Choleraesuis str77.1783 %Subject ←→ Query37.6094
NC_011205:329155Salmonella enterica subsp. enterica serovar Dublin str. CT_0202185375.674 %Subject ←→ Query38.7596
NC_011205:2462025Salmonella enterica subsp. enterica serovar Dublin str. CT_0202185377.3621 %Subject ←→ Query37.1954
NC_011205:1186097Salmonella enterica subsp. enterica serovar Dublin str. CT_0202185375.2206 %Subject ←→ Query34.4302
NC_011294:2334979Salmonella enterica subsp. enterica serovar Enteritidis str77.2181 %Subject ←→ Query36.9998
NC_011274:2325840Salmonella enterica subsp. enterica serovar Gallinarum str. 287/9177.3744 %Subject ←→ Query37.3546
NC_011274:1094379Salmonella enterica subsp. enterica serovar Gallinarum str. 287/9175.3094 %Subject ←→ Query35.0035
NC_016831:687549*Salmonella enterica subsp. enterica serovar Gallinarum/pullorum77.3407 %Subject ←→ Query35.667
NC_016831:3779611Salmonella enterica subsp. enterica serovar Gallinarum/pullorum75.0613 %Subject ←→ Query36.4482
NC_011080:3976441Salmonella enterica subsp. enterica serovar Newport str. SL254,75.3033 %Subject ←→ Query36.5166
NC_011080:2342672Salmonella enterica subsp. enterica serovar Newport str. SL254,77.4602 %Subject ←→ Query37.4165
NC_011147:682897*Salmonella enterica subsp. enterica serovar Paratyphi A str76.106 %Subject ←→ Query35.9573
NC_006511:682863*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC76.0784 %Subject ←→ Query36.3874
NC_010102:3955479Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,75.432 %Subject ←→ Query37.2943
NC_012125:3879917*Salmonella enterica subsp. enterica serovar Paratyphi C strain75.098 %Subject ←→ Query37.027
NC_012125:1517925*Salmonella enterica subsp. enterica serovar Paratyphi C strain76.6544 %Subject ←→ Query35.3356
NC_011094:638552Salmonella enterica subsp. enterica serovar Schwarzengrund str76.5931 %Subject ←→ Query36.8525
NC_003198:2297837Salmonella enterica subsp. enterica serovar Typhi str. CT18,77.3774 %Subject ←→ Query37.159
NC_003198:3824187Salmonella enterica subsp. enterica serovar Typhi str. CT18,76.9976 %Subject ←→ Query35.4207
NC_016832:687000*Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,76.057 %Subject ←→ Query36.1337
NC_004631:685357*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete77.451 %Subject ←→ Query36.1113
NC_004631:3809678Salmonella enterica subsp. enterica serovar Typhi Ty2, complete77.019 %Subject ←→ Query36.1376
NC_016810:2719779Salmonella enterica subsp. enterica serovar Typhimurium str76.2714 %Subject ←→ Query31.43
NC_016810:2325190*Salmonella enterica subsp. enterica serovar Typhimurium str78.8388 %Subject ←→ Query33.5449
NC_016861:22256Salmonella enterica subsp. enterica serovar Typhimurium str76.2929 %Subject ←→ Query33.2928
NC_016860:2323017*Salmonella enterica subsp. enterica serovar Typhimurium str78.8358 %Subject ←→ Query33.5197
NC_016856:2773995Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S76.0202 %Subject ←→ Query31.5078
NC_016856:2379027*Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S78.8664 %Subject ←→ Query33.6556
NC_017046:2324554*Salmonella enterica subsp. enterica serovar Typhimurium str. 79878.8235 %Subject ←→ Query35.0182
NC_016857:2719779Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/7476.3848 %Subject ←→ Query31.43
NC_016857:2325190*Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/7478.8388 %Subject ←→ Query33.5449
NC_016863:2721826Salmonella enterica subsp. enterica serovar Typhimurium str. UK-176.5196 %Subject ←→ Query30.7584
NC_016863:2324293*Salmonella enterica subsp. enterica serovar Typhimurium str. UK-178.0484 %Subject ←→ Query37.0731
NC_003197:4005857Salmonella typhimurium LT2, complete genome75.1317 %Subject ←→ Query36.3904
NC_020064:2779864Serratia marcescens FGI94, complete genome77.7849 %Subject ←→ Query33.0496
NC_020064:1547524Serratia marcescens FGI94, complete genome76.6176 %Subject ←→ Query32.3124
NC_020064:1409596*Serratia marcescens FGI94, complete genome75.7445 %Subject ←→ Query30.867
NC_020064:4751097*Serratia marcescens FGI94, complete genome75.4473 %Subject ←→ Query41.5044
NC_020064:3998715*Serratia marcescens FGI94, complete genome75.3585 %Subject Query49.6448
NC_020064:3790472Serratia marcescens FGI94, complete genome78.5601 %Subject Query47.0475
NC_009832:1946401Serratia proteamaculans 568, complete genome78.4467 %Subject ←→ Query35.908
NC_015566:316340Serratia sp. AS12 chromosome, complete genome76.0447 %Subject ←→ Query34.9699
NC_015566:4662171Serratia sp. AS12 chromosome, complete genome78.6244 %Subject ←→ Query41.8855
NC_016822:246715*Shigella sonnei 53G, complete genome77.883 %Subject ←→ Query31.6959
NC_007712:4023516Sodalis glossinidius str. 'morsitans', complete genome75.2298 %Subject ←→ Query33.8969
NC_007712:2287053Sodalis glossinidius str. 'morsitans', complete genome77.0803 %Subject ←→ Query36.533
NC_007712:1893066*Sodalis glossinidius str. 'morsitans', complete genome76.2868 %Subject ←→ Query32.276
NC_007712:433500Sodalis glossinidius str. 'morsitans', complete genome75.8241 %Subject ←→ Query37.0845
NC_013892:753307Xenorhabdus bovienii SS-2004 chromosome, complete genome77.9259 %Subject ←→ Query34.8067
NC_013892:274297Xenorhabdus bovienii SS-2004 chromosome, complete genome82.8768 %Subject ←→ Query32.8965
NC_014228:3282500Xenorhabdus nematophila ATCC 19061, complete genome81.8781 %Subject ←→ Query41.4806
NC_014228:3022903Xenorhabdus nematophila ATCC 19061, complete genome76.3419 %Subject ←→ Query39.1304
NC_014228:2883500Xenorhabdus nematophila ATCC 19061, complete genome77.886 %Subject ←→ Query39.0811
NC_017168:1631052Yersinia pestis A1122 chromosome, complete genome92.0558 %Subject ←→ Query37.1693
NC_017168:4363000Yersinia pestis A1122 chromosome, complete genome76.4737 %Subject ←→ Query33.4186
NC_010159:1101241Yersinia pestis Angola, complete genome75.5637 %Subject ←→ Query33.9894
NC_008150:3529430Yersinia pestis Antiqua, complete genome76.2347 %Subject ←→ Query31.4433
NC_008150:1420825*Yersinia pestis Antiqua, complete genome75.8272 %Subject ←→ Query37.0184
NC_017265:4265659Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,91.6973 %Subject ←→ Query34.6939
NC_005810:4469156Yersinia pestis biovar Microtus str. 91001, complete genome84.6752 %Subject ←→ Query29.5112
NC_005810:3238391Yersinia pestis biovar Microtus str. 91001, complete genome75.72 %Subject ←→ Query34.2139
NC_005810:1794490*Yersinia pestis biovar Microtus str. 91001, complete genome75.9099 %Subject ←→ Query37.035
NC_003143:645559Yersinia pestis CO92, complete genome75.818 %Subject ←→ Query34.4007
NC_003143:4006884Yersinia pestis CO92, complete genome91.7157 %Subject ←→ Query29.6176
NC_003143:2778494Yersinia pestis CO92, complete genome76.204 %Subject ←→ Query30.2293
NC_003143:2137945*Yersinia pestis CO92, complete genome75.7016 %Subject ←→ Query37.3318
NC_017154:3898925Yersinia pestis D106004 chromosome, complete genome91.7096 %Subject ←→ Query29.6936
NC_017154:2137500*Yersinia pestis D106004 chromosome, complete genome75.7721 %Subject ←→ Query37.4876
NC_017160:2362002*Yersinia pestis D182038 chromosome, complete genome75.4596 %Subject ←→ Query29.9411
NC_004088:3955933Yersinia pestis KIM, complete genome75.8211 %Subject ←→ Query33.4603
NC_004088:266543Yersinia pestis KIM, complete genome84.326 %Subject ←→ Query30.0081
NC_008149:4053363Yersinia pestis Nepal516, complete genome84.329 %Subject ←→ Query30.0006
NC_008149:1221637Yersinia pestis Nepal516, complete genome75.7996 %Subject ←→ Query30.5812
NC_009381:222735Yersinia pestis Pestoides F chromosome, complete genome91.6789 %Subject ←→ Query33.5238
NC_014029:3958811Yersinia pestis Z176003 chromosome, complete genome91.7096 %Subject ←→ Query29.6054
NC_014029:331919Yersinia pestis Z176003 chromosome, complete genome79.6875 %Subject ←→ Query35.6572
NC_014029:1512605Yersinia pestis Z176003 chromosome, complete genome76.9485 %Subject ←→ Query32.2364
NC_006155:4302826Yersinia pseudotuberculosis IP 32953, complete genome91.7953 %Subject ←→ Query30.1556
NC_006155:4105542Yersinia pseudotuberculosis IP 32953, complete genome76.0662 %Subject ←→ Query34.268
NC_006155:1567306Yersinia pseudotuberculosis IP 32953, complete genome76.011 %Subject ←→ Query33.2342
NC_010634:4234932Yersinia pseudotuberculosis PB1/+, complete genome88.0208 %Subject ←→ Query30.3016
NC_010634:4045794Yersinia pseudotuberculosis PB1/+, complete genome76.0263 %Subject ←→ Query34.0011
NC_010634:1565788Yersinia pseudotuberculosis PB1/+, complete genome76.0509 %Subject ←→ Query33.0113
NC_010465:429095Yersinia pseudotuberculosis YPIII, complete genome92.4969 %Subject ←→ Query29.1646