Pre_GI: OUP Neighbours

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Query: NC_009708:1694685 Yersinia pseudotuberculosis IP 31758 chromosome, complete genome

D: 30.9126

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is serotype 1b and was isolated in 1966 from the stools of a patient presenting with scarlet-like fever in the Primorski region of the former USSR. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.

Number of Neighbours: 152

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_017168:2892000Yersinia pestis A1122 chromosome, complete genome94.3413 %Subject ←→ Query27.5961
NC_017160:2740870Yersinia pestis D182038 chromosome, complete genome96.7463 %Subject ←→ Query28.2618
NC_016835:405482Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,75.2696 %Subject ←→ Query28.7087
NC_010468:1343228Escherichia coli ATCC 8739, complete genome76.6636 %Subject ←→ Query29.0512
NC_012912:4737703Dickeya zeae Ech1591, complete genome78.2138 %Subject ←→ Query29.5142
NC_017046:819414Salmonella enterica subsp. enterica serovar Typhimurium str. 79875.8578 %Subject ←→ Query29.5416
NC_012125:3905782Salmonella enterica subsp. enterica serovar Paratyphi C strain78.7347 %Subject ←→ Query29.6328
NC_016810:819489Salmonella enterica subsp. enterica serovar Typhimurium str76.2071 %Subject ←→ Query30.0128
NC_016857:819429Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/7476.057 %Subject ←→ Query30.0128
NC_015968:204969*Enterobacter asburiae LF7a chromosome, complete genome77.0588 %Subject ←→ Query30.2205
NC_008149:1221637Yersinia pestis Nepal516, complete genome75.5607 %Subject ←→ Query30.5812
NC_020063:2343813Enterobacteriaceae bacterium strain FGI 57, complete genome76.6789 %Subject ←→ Query30.8186
NC_017154:902739Yersinia pestis D106004 chromosome, complete genome79.038 %Subject ←→ Query30.8256
NC_012880:1127997*Dickeya dadantii Ech703, complete genome77.4234 %Subject ←→ Query30.9614
NC_020181:1057476Enterobacter aerogenes EA1509E, complete genome76.5441 %Subject ←→ Query31.0919
NC_006155:3040769Yersinia pseudotuberculosis IP 32953, complete genome92.2426 %Subject ←→ Query31.1041
NC_006511:3759550Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC78.6673 %Subject ←→ Query31.1345
NC_010634:2960000Yersinia pseudotuberculosis PB1/+, complete genome91.5533 %Subject ←→ Query31.2014
NC_012917:4328463Pectobacterium carotovorum subsp. carotovorum PC1, complete genome75.2727 %Subject ←→ Query31.405
NC_012962:3864000*Photorhabdus asymbiotica, complete genome75.3002 %Subject ←→ Query31.492
NC_014029:961522Yersinia pestis Z176003 chromosome, complete genome78.894 %Subject ←→ Query31.5068
NC_012912:1295653Dickeya zeae Ech1591, complete genome75.0245 %Subject ←→ Query31.554
NC_011149:3895921Salmonella enterica subsp. enterica serovar Agona str. SL483,78.3241 %Subject ←→ Query31.5601
NC_004088:1801819Yersinia pestis KIM, complete genome92.788 %Subject ←→ Query31.8002
NC_016818:1963875Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, complete75.1134 %Subject ←→ Query31.9066
NC_004631:3841975Salmonella enterica subsp. enterica serovar Typhi Ty2, complete78.6581 %Subject ←→ Query32.0647
NC_010102:3919999Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,78.0637 %Subject ←→ Query32.0708
NC_003197:3971905Salmonella typhimurium LT2, complete genome77.9259 %Subject ←→ Query32.0829
NC_008149:2411161Yersinia pestis Nepal516, complete genome93.511 %Subject ←→ Query32.2349
NC_014029:1512605Yersinia pestis Z176003 chromosome, complete genome77.9228 %Subject ←→ Query32.2364
NC_012912:1229333Dickeya zeae Ech1591, complete genome75.7904 %Subject ←→ Query32.2592
NC_012125:793812*Salmonella enterica subsp. enterica serovar Paratyphi C strain75.9161 %Subject ←→ Query32.2957
NC_020064:1547524Serratia marcescens FGI94, complete genome75.6801 %Subject ←→ Query32.3124
NC_012912:325913Dickeya zeae Ech1591, complete genome76.1029 %Subject ←→ Query32.3565
NC_011083:3985618Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,78.1373 %Subject ←→ Query32.4599
NC_003198:3855157Salmonella enterica subsp. enterica serovar Typhi str. CT18,78.6581 %Subject ←→ Query32.5632
NC_010465:1724000Yersinia pseudotuberculosis YPIII, complete genome95.0306 %Subject ←→ Query32.6727
NC_013592:3397304Dickeya dadantii Ech586, complete genome77.0466 %Subject ←→ Query32.6808
NC_012917:4646491Pectobacterium carotovorum subsp. carotovorum PC1, complete genome75.432 %Subject ←→ Query32.6958
NC_014306:2476316Erwinia billingiae Eb661, complete genome75.2328 %Subject ←→ Query32.9311
NC_010634:1565788Yersinia pseudotuberculosis PB1/+, complete genome78.367 %Subject ←→ Query33.0113
NC_017160:905783Yersinia pestis D182038 chromosome, complete genome77.258 %Subject ←→ Query33.1867
NC_006155:1567306Yersinia pseudotuberculosis IP 32953, complete genome78.3456 %Subject ←→ Query33.2342
NC_012880:3645304Dickeya dadantii Ech703, complete genome76.0907 %Subject ←→ Query33.3293
NC_017168:4363000Yersinia pestis A1122 chromosome, complete genome78.6734 %Subject ←→ Query33.4186
NC_017154:3139614Yersinia pestis D106004 chromosome, complete genome94.519 %Subject ←→ Query33.4691
NC_009381:588137Yersinia pestis Pestoides F chromosome, complete genome77.8156 %Subject ←→ Query33.692
NC_008800:1497746Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,85.7476 %Subject ←→ Query33.823
NC_003143:2849377Yersinia pestis CO92, complete genome93.7684 %Subject ←→ Query33.8521
NC_010159:1861465Yersinia pestis Angola, complete genome93.943 %Subject ←→ Query33.8947
NC_005810:2613456Yersinia pestis biovar Microtus str. 91001, complete genome93.9767 %Subject ←→ Query33.9433
NC_015224:3191000Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,84.5864 %Subject ←→ Query34.0665
NC_013592:3618248*Dickeya dadantii Ech586, complete genome77.3774 %Subject ←→ Query34.4581
NC_011415:11381*Escherichia coli SE11 chromosome, complete genome77.1048 %Subject ←→ Query34.6212
NC_011741:11381*Escherichia coli IAI1 chromosome, complete genome77.1599 %Subject ←→ Query34.732
NC_017265:1521276Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,94.0012 %Subject ←→ Query35.1936
NC_016514:2647984*Enterobacter cloacae EcWSU1 chromosome, complete genome78.9491 %Subject ←→ Query35.4683
NC_010067:3753971Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete75.3278 %Subject ←→ Query35.7065
NC_010067:632683Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete75.5852 %Subject ←→ Query35.8098
NC_013421:1545386Pectobacterium wasabiae WPP163, complete genome77.2978 %Subject ←→ Query35.9253
NC_013421:1143500Pectobacterium wasabiae WPP163, complete genome76.9148 %Subject ←→ Query36.4256
NC_012125:3879917*Salmonella enterica subsp. enterica serovar Paratyphi C strain75.0735 %Subject ←→ Query37.027
NC_012962:3568046Photorhabdus asymbiotica, complete genome77.1415 %Subject ←→ Query37.813
NC_011149:2040396Salmonella enterica subsp. enterica serovar Agona str. SL483,77.6471 %Subject ←→ Query37.9381
NC_013892:853366Xenorhabdus bovienii SS-2004 chromosome, complete genome78.5876 %Subject ←→ Query38.0885
NC_016863:3933848Salmonella enterica subsp. enterica serovar Typhimurium str. UK-178.3058 %Subject ←→ Query39.056
NC_011147:3755725Salmonella enterica subsp. enterica serovar Paratyphi A str78.6489 %Subject ←→ Query39.0564
NC_017046:3991551Salmonella enterica subsp. enterica serovar Typhimurium str. 79878.0453 %Subject ←→ Query39.0657
NC_016810:3993863Salmonella enterica subsp. enterica serovar Typhimurium str78.3548 %Subject ←→ Query39.1598
NC_016857:3993864Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/7478.3456 %Subject ←→ Query39.189
NC_016856:3985597Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S77.9259 %Subject ←→ Query39.3604
NC_011080:3941909Salmonella enterica subsp. enterica serovar Newport str. SL254,78.4161 %Subject ←→ Query39.4334
NC_012962:1661683Photorhabdus asymbiotica, complete genome77.1017 %Subject ←→ Query40.4188
NC_011094:3853036Salmonella enterica subsp. enterica serovar Schwarzengrund str77.8431 %Subject ←→ Query40.4943
NC_016818:2542295*Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, complete76.6728 %Subject ←→ Query40.8603
NC_020064:3998715*Serratia marcescens FGI94, complete genome78.1403 %Subject Query49.6448