Pre_GI: OUP Neighbours

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Query: NC_009567:904922 Haemophilus influenzae PittGG chromosome, complete genome

D: 33.0055

Host Lineage: Haemophilus influenzae; Haemophilus; Pasteurellaceae; Pasteurellales; Proteobacteria; Bacteria

General Information: Strain PittGG is a non-typeable Haemophilus influenzae (NTHi) isolate recovered by Dr. Robert Wadowsky from the external ear discharge of a spontaneously perforated tympanic membrane of a child in Pittsburgh, USA who had been diagnosed with otorrhea. Causes respiratory tract infections primarily in children. A group of organisms that are either obligate parasites or commensal organisms found in animal mucous membranes. Almost all species require the presence of important growth factors found in the blood of their hosts, including either X factor (protoporphyrin IX or heme) or V factor (nicotinamide adenine dinucleotide (NAD or NADP)). This organism was first isolated in the 1890s during an influenza pandemic by Pfeiffer, and was originally thought to be the source of influenza, although later it was shown to be a secondary pathogen and may be synergistic with the influenza virus. This bacterium is one of the leading causes of meningitis in young children, and it may also cause septicemia, otitis media (inflammation of the middle ear), sinusitis (inflammation of the sinus cavity) and chronic bronchitis. It is highly adapted to its human host and typically lives in the nasopharynx and is a major cause of lower respiratory infections in infants and small children in developing countries (type 1b strain), although vaccine use has resulted in the decline of infections. The encapsulated organism can penetrate the blood and avoid both phagocytosis and complement-mediated lysis. All known strains produce neuraminidase and an IgA protease as well as fimbrial adhesins for attachment.

Number of Neighbours: 43




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_014922:825396*Haemophilus influenzae F3047 chromosome, complete genome90.1501 %Subject ←→ Query30.1445
NC_016809:1778000Haemophilus influenzae 10810, complete genome86.0141 %Subject ←→ Query31.4851
NC_013766:417991Listeria monocytogenes 08-5578 chromosome, complete genome79.7518 %Subject ←→ Query28.129
NC_013768:418000Listeria monocytogenes 08-5923, complete genome79.7273 %Subject ←→ Query28.129
NC_011660:2175537Listeria monocytogenes HCC23 chromosome, complete genome78.6581 %Subject ←→ Query31.4081
NC_013768:1983711Listeria monocytogenes 08-5923, complete genome78.6366 %Subject Query22.2499
NC_010519:416658*Haemophilus somnus 2336 chromosome, complete genome78.4038 %Subject ←→ Query27.2413
NC_003210:721824Listeria monocytogenes EGD-e, complete genome78.1097 %Subject Query22.1346
NC_016808:1335087Pasteurella multocida 36950 chromosome, complete genome78.0607 %Subject ←→ Query35.9035
NC_010519:71365Haemophilus somnus 2336 chromosome, complete genome77.7482 %Subject ←→ Query26.3581
NC_013766:757987Listeria monocytogenes 08-5578 chromosome, complete genome77.356 %Subject Query21.6318
NC_016052:842762Tetragenococcus halophilus NBRC 12172, complete genome77.2702 %Subject Query21.9417
NC_013768:721897Listeria monocytogenes 08-5923, complete genome77.2641 %Subject ←→ Query23.7536
NC_010519:1802294*Haemophilus somnus 2336 chromosome, complete genome77.0466 %Subject ←→ Query24.1488
NC_010519:1165418Haemophilus somnus 2336 chromosome, complete genome77.0404 %Subject ←→ Query26.5151
NC_010519:2033980*Haemophilus somnus 2336 chromosome, complete genome76.9577 %Subject ←→ Query25.683
NC_010519:796229Haemophilus somnus 2336 chromosome, complete genome76.8413 %Subject ←→ Query25.037
NC_012488:453431Listeria monocytogenes Clip81459, complete genome76.5748 %Subject Query22.4617
NC_012488:1159463Listeria monocytogenes Clip81459, complete genome76.3726 %Subject ←→ Query23.6635
NC_016052:1818659Tetragenococcus halophilus NBRC 12172, complete genome76.3297 %Subject ←→ Query28.6557
NC_011660:724711*Listeria monocytogenes HCC23 chromosome, complete genome76.2592 %Subject Query22.6167
NC_002973:730942Listeria monocytogenes str. 4b F2365, complete genome76.2469 %Subject Query22.6302
NC_010519:445936Haemophilus somnus 2336 chromosome, complete genome76.2316 %Subject ←→ Query23.2855
NC_011660:366000Listeria monocytogenes HCC23 chromosome, complete genome76.2132 %Subject ←→ Query26.8414
NC_012488:732233Listeria monocytogenes Clip81459, complete genome76.1366 %Subject ←→ Query27.4501
NC_011660:1889504Listeria monocytogenes HCC23 chromosome, complete genome76.057 %Subject ←→ Query23.6169
NC_017316:1840462*Enterococcus faecalis OG1RF chromosome, complete genome75.9865 %Subject ←→ Query31.1734
NC_013766:906550Listeria monocytogenes 08-5578 chromosome, complete genome75.913 %Subject Query22.0057
NC_013766:679906Listeria monocytogenes 08-5578 chromosome, complete genome75.8487 %Subject ←→ Query23.3402
NC_018704:2149229*Amphibacillus xylanus NBRC 15112, complete genome75.7721 %Subject Query21.0816
NC_013766:1202713Listeria monocytogenes 08-5578 chromosome, complete genome75.6066 %Subject Query21.9875
NC_002952:1497785Staphylococcus aureus subsp. aureus MRSA252, complete genome75.5484 %Subject ←→ Query29.2682
NC_015460:1687684*Gallibacterium anatis UMN179 chromosome, complete genome75.4412 %Subject ←→ Query33.257
NC_011660:2756860Listeria monocytogenes HCC23 chromosome, complete genome75.4167 %Subject ←→ Query24.8401
NC_017337:1478448Staphylococcus aureus subsp. aureus ED133 chromosome, complete75.4044 %Subject Query20.2389
NC_017316:2466244*Enterococcus faecalis OG1RF chromosome, complete genome75.3339 %Subject Query22.7274
NC_002973:1846000*Listeria monocytogenes str. 4b F2365, complete genome75.2543 %Subject Query20.0663
NC_015277:4269399Sphingobacterium sp. 21 chromosome, complete genome75.1624 %Subject ←→ Query26.7631
NC_017351:1464209*Staphylococcus aureus subsp. aureus 11819-97 chromosome, complete75.1501 %Subject Query20.2004
NC_017342:1848031Staphylococcus aureus subsp. aureus TCH60 chromosome, complete75.1409 %Subject ←→ Query26.3068
NC_016928:1440319Staphylococcus aureus subsp. aureus M013 chromosome, complete75.1317 %Subject Query21.1409
NC_016912:1374351Staphylococcus aureus subsp. aureus VC40 chromosome, complete75.049 %Subject Query20.659
NC_009641:1470500Staphylococcus aureus subsp. aureus str. Newman chromosome,75.049 %Subject Query22.2601