Pre_GI: OUP MCL Sub Cluster Neighbours

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Query: NC_009381:321577 Yersinia pestis Pestoides F chromosome, complete genome

D: 29.4686

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Atypical strain isolated from the former Soviet Union, USSR. This strain lacks a plasminogen activator and is virulent by the aerosol route. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host DescriptionProposed Island FlowSubject Island D
NC_016609:3835656Niastella koreensis GR20-10 chromosome, complete genomeSubject ←→ Query27.6597
NC_017265:4171500Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,Subject ←→ Query28.4898
NC_010634:3269010*Yersinia pseudotuberculosis PB1/+, complete genomeSubject ←→ Query28.5333
NC_017168:601928Yersinia pestis A1122 chromosome, complete genomeSubject ←→ Query28.5688
NC_006371:1973500Photobacterium profundum SS9 chromosome 2, complete sequenceSubject ←→ Query28.6413
NC_015224:279037Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,Subject ←→ Query28.7938
NC_009381:1655731Yersinia pestis Pestoides F chromosome, complete genomeSubject ←→ Query29.0263
NC_017265:2557476Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,Subject ←→ Query29.2631
NC_017154:478000Yersinia pestis D106004 chromosome, complete genomeSubject ←→ Query29.2771
NC_017154:2901300Yersinia pestis D106004 chromosome, complete genomeSubject ←→ Query29.3045
NC_017168:2560000*Yersinia pestis A1122 chromosome, complete genomeSubject ←→ Query29.3835
NC_009381:321577Yersinia pestis Pestoides F chromosome, complete genomeSubject ←→ Query29.4686
NC_008150:2599661Yersinia pestis Antiqua, complete genomeSubject ←→ Query29.7787
NC_010995:1459831*Cellvibrio japonicus Ueda107, complete genomeSubject ←→ Query29.9125
NC_017154:848500*Yersinia pestis D106004 chromosome, complete genomeSubject ←→ Query29.9185
NC_010995:3945339Cellvibrio japonicus Ueda107, complete genomeSubject ←→ Query29.952
NC_014029:536000Yersinia pestis Z176003 chromosome, complete genomeSubject ←→ Query30.639
NC_017168:1729922Yersinia pestis A1122 chromosome, complete genomeSubject ←→ Query30.8297
NC_010995:3863373Cellvibrio japonicus Ueda107, complete genomeSubject ←→ Query30.8325
NC_017160:3986844Yersinia pestis D182038 chromosome, complete genomeSubject ←→ Query31.4324
NC_017168:3948514Yersinia pestis A1122 chromosome, complete genomeSubject ←→ Query31.5192
NC_010995:2123909Cellvibrio japonicus Ueda107, complete genomeSubject ←→ Query31.8927
NC_010995:2547164*Cellvibrio japonicus Ueda107, complete genomeSubject ←→ Query32.0273
NC_010995:3197686Cellvibrio japonicus Ueda107, complete genomeSubject ←→ Query32.427
NC_017154:3997810Yersinia pestis D106004 chromosome, complete genomeSubject ←→ Query32.4367
NC_014029:4057696Yersinia pestis Z176003 chromosome, complete genomeSubject ←→ Query32.6647
NC_010814:3673983Geobacter lovleyi SZ, complete genomeSubject ←→ Query32.9706
NC_016745:2229271*Oceanimonas sp. GK1 chromosome, complete genomeSubject ←→ Query33.65
NC_013892:114884Xenorhabdus bovienii SS-2004 chromosome, complete genomeSubject ←→ Query33.7164
NC_017098:840492*Spirochaeta africana DSM 8902 chromosome, complete genomeSubject ←→ Query33.8358
NC_010465:1427170Yersinia pseudotuberculosis YPIII, complete genomeSubject ←→ Query34.0046
NC_010995:1648897*Cellvibrio japonicus Ueda107, complete genomeSubject ←→ Query34.0285
NC_010995:2855595*Cellvibrio japonicus Ueda107, complete genomeSubject ←→ Query34.0726
NC_010995:404574Cellvibrio japonicus Ueda107, complete genomeSubject ←→ Query34.302
NC_010995:671389Cellvibrio japonicus Ueda107, complete genomeSubject ←→ Query34.572
NC_010995:3821327*Cellvibrio japonicus Ueda107, complete genomeSubject ←→ Query35.471
NC_010995:20181Cellvibrio japonicus Ueda107, complete genomeSubject ←→ Query35.7388
NC_008700:2451798*Shewanella amazonensis SB2B, complete genomeSubject ←→ Query35.7551
NC_010995:2798000Cellvibrio japonicus Ueda107, complete genomeSubject ←→ Query36.1641
NC_008322:4000330Shewanella sp. MR-7, complete genomeSubject ←→ Query36.3084
NC_010995:948041Cellvibrio japonicus Ueda107, complete genomeSubject ←→ Query36.5059
NC_008700:1115436*Shewanella amazonensis SB2B, complete genomeSubject ←→ Query36.6166
NC_014228:2270000Xenorhabdus nematophila ATCC 19061, complete genomeSubject ←→ Query37.3838
NC_009708:483253Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeSubject ←→ Query37.7326
NC_010995:1139867Cellvibrio japonicus Ueda107, complete genomeSubject ←→ Query37.8817
NC_016745:546249Oceanimonas sp. GK1 chromosome, complete genomeSubject ←→ Query38.1864
NC_008700:312099*Shewanella amazonensis SB2B, complete genomeSubject ←→ Query38.391
NC_010814:794211Geobacter lovleyi SZ, complete genomeSubject ←→ Query38.4543
NC_012962:293976Photorhabdus asymbiotica, complete genomeSubject ←→ Query39.1233
NC_018868:3229381Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeSubject Query39.5278
NC_009349:3396Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, completeSubject Query39.5519
NC_016835:1Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,Subject Query40.191
NC_013892:1272448Xenorhabdus bovienii SS-2004 chromosome, complete genomeSubject Query40.5245
NC_011601:3338888Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeSubject Query42.321
NC_015424:2357600*Aeromonas veronii B565 chromosome, complete genomeSubject Query42.5888
NC_013353:5090696*Escherichia coli O103:H2 str. 12009, complete genomeSubject Query42.8493
NC_009481:82767Synechococcus sp. WH 7803 chromosome, complete genomeSubject Query50.978
NC_014541:1165991Ferrimonas balearica DSM 9799 chromosome, complete genomeSubject Query51.4043
NC_008570:4594436*Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeSubject Query51.6501
NC_015424:1689500Aeromonas veronii B565 chromosome, complete genomeSubject Query53.0358