Pre_GI: OUP Neighbours

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Query: NC_009140:60806 Salmonella enterica enterica sv Newport str. SL254, complete

D: 38.1088

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 11




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_010815:40357Geobacter lovleyi SZ plasmid pGLOV01, complete sequence75.8456 %Subject ←→ Query30.9501
NC_010814:190673Geobacter lovleyi SZ, complete genome75.0306 %Subject ←→ Query33.2259
NC_010814:4099Geobacter lovleyi SZ, complete genome75.2114 %Subject ←→ Query33.4228
NC_010814:2275199*Geobacter lovleyi SZ, complete genome75.6005 %Subject ←→ Query34.742
NC_014228:2270000Xenorhabdus nematophila ATCC 19061, complete genome77.5827 %Subject ←→ Query37.3838
NC_009350:137645Aeromonas salmonicida subsp. salmonicida A449 plasmid 5, complete76.5839 %Subject ←→ Query39.5423
NC_007516:1561166Synechococcus sp. CC9605, complete genome77.1814 %Subject ←→ Query40.2364
NC_007516:2037477*Synechococcus sp. CC9605, complete genome75.9314 %Subject ←→ Query42.4873
NC_015424:3520783Aeromonas veronii B565 chromosome, complete genome76.0386 %Subject ←→ Query43.6942
NC_005070:1486496Synechococcus sp. WH 8102, complete genome77.8125 %Subject ←→ Query45.9664
NC_007516:774489*Synechococcus sp. CC9605, complete genome75.2757 %Subject Query55.3327