Pre_GI: OUP Neighbours

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Query: NC_008526:506263 Lactobacillus casei ATCC 334, complete genome

D: 30.2894

Host Lineage: Lactobacillus casei; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain was isolated from Emmental cheese. Starter culture for milk fermentation and flavor development of cheese. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, fermented milks, and other products, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully created, cultivated, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus casei is used as a starter culture during milk fermentation and for the flavor development of certain bacterial-ripened cheeses.

Number of Neighbours: 78

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_013656:1071667Lactococcus lactis subsp. lactis KF147, complete genome75.1685 %Subject Query19.1695
NC_016011:678419Listeria ivanovii subsp. ivanovii PAM 55, complete genome75.4412 %Subject Query19.8549
NC_014136:329484Leuconostoc kimchii IMSNU11154 chromosome, complete genome77.2396 %Subject Query20.2253
NC_015930:821342Lactococcus garvieae ATCC 49156, complete genome75.3707 %Subject ←→ Query20.8694
NC_009513:870837Lactobacillus reuteri F275, complete genome75.962 %Subject ←→ Query22.0209
NC_015391:504227Carnobacterium sp. 17-4 chromosome, complete genome75.5882 %Subject ←→ Query22.3067
NC_015428:193817Lactobacillus buchneri NRRL B-30929 chromosome, complete genome75.2911 %Subject ←→ Query22.7687
NC_005966:3334864Acinetobacter sp. ADP1, complete genome75.3309 %Subject ←→ Query22.8133
NC_008527:740060*Lactococcus lactis subsp. cremoris SK11, complete genome75.1624 %Subject ←→ Query22.9383
NC_015697:256000*Lactobacillus reuteri SD2112 chromosome, complete genome77.0558 %Subject ←→ Query23.2612
NC_009848:2335265Bacillus pumilus SAFR-032, complete genome76.0723 %Subject ←→ Query23.4436
NC_013891:640784*Listeria seeligeri serovar 1/2b str. SLCC3954, complete genome75.4412 %Subject ←→ Query23.8704
NC_014334:1039248Lactobacillus casei str. Zhang chromosome, complete genome77.2855 %Subject ←→ Query24.0151
NC_002663:62500Pasteurella multocida subsp. multocida str. Pm70, complete genome75.5086 %Subject ←→ Query24.6055
NC_014319:1613611Leuconostoc gasicomitatum LMG 18811, complete genome76.8597 %Subject ←→ Query24.79
NC_014334:2696000Lactobacillus casei str. Zhang chromosome, complete genome77.6379 %Subject ←→ Query25.2128
NC_009848:3631243Bacillus pumilus SAFR-032, complete genome75.2083 %Subject ←→ Query25.4153
NC_014334:2307950Lactobacillus casei str. Zhang chromosome, complete genome76.8566 %Subject ←→ Query25.5593
NC_009004:1770497*Lactococcus lactis subsp. cremoris MG1363, complete genome75.2328 %Subject ←→ Query25.5739
NC_010999:349252Lactobacillus casei, complete genome76.7188 %Subject ←→ Query25.611
NC_009848:354202*Bacillus pumilus SAFR-032, complete genome75.3615 %Subject ←→ Query25.7688
NC_010080:1885677Lactobacillus helveticus DPC 4571, complete genome76.1642 %Subject ←→ Query25.9241
NC_010080:1911932Lactobacillus helveticus DPC 4571, complete genome75.913 %Subject ←→ Query25.9336
NC_014334:369974Lactobacillus casei str. Zhang chromosome, complete genome80.1409 %Subject ←→ Query26.4531
NC_010999:2059738Lactobacillus casei, complete genome76.8229 %Subject ←→ Query26.5655
NC_014724:1101950Lactobacillus amylovorus GRL 1112 chromosome, complete genome80.6985 %Subject ←→ Query26.6698
NC_015428:1483768Lactobacillus buchneri NRRL B-30929 chromosome, complete genome80.4718 %Subject ←→ Query26.7814
NC_008526:2373190Lactobacillus casei ATCC 334, complete genome77.2825 %Subject ←→ Query26.8543
NC_013166:194614*Kangiella koreensis DSM 16069, complete genome76.1366 %Subject ←→ Query27.042
NC_010999:2516000Lactobacillus casei, complete genome76.8168 %Subject ←→ Query27.1158
NC_010999:2483000Lactobacillus casei, complete genome75.9467 %Subject ←→ Query27.2718
NC_008526:1973500Lactobacillus casei ATCC 334, complete genome76.8076 %Subject ←→ Query27.286
NC_015222:94847Nitrosomonas sp. AL212 chromosome, complete genome75.3033 %Subject ←→ Query27.6612
NC_012984:1027898Lactobacillus plantarum JDM1, complete genome76.4246 %Subject ←→ Query27.8362
NC_005140:660305Vibrio vulnificus YJ016 chromosome II, complete sequence77.9718 %Subject ←→ Query27.8453
NC_015975:789312Lactobacillus ruminis ATCC 27782 chromosome, complete genome75.1685 %Subject ←→ Query27.8749
NC_004116:1827351*Streptococcus agalactiae 2603V/R, complete genome75.095 %Subject ←→ Query27.9143
NC_010999:2450974*Lactobacillus casei, complete genome77.6072 %Subject ←→ Query28.2344
NC_004460:81687Vibrio vulnificus CMCP6 chromosome II, complete sequence77.9075 %Subject ←→ Query28.2861
NC_008497:1111891*Lactobacillus brevis ATCC 367, complete genome76.4737 %Subject ←→ Query28.4188
NC_013199:1150000Lactobacillus rhamnosus Lc 705, complete genome75.6005 %Subject ←→ Query28.4351
NC_008526:74500*Lactobacillus casei ATCC 334, complete genome75.5239 %Subject ←→ Query28.9383
NC_010999:1245239Lactobacillus casei, complete genome79.6262 %Subject ←→ Query29.2811
NC_009783:1956000Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequence75.9957 %Subject ←→ Query29.2954
NC_014334:37040Lactobacillus casei str. Zhang chromosome, complete genome76.5962 %Subject ←→ Query29.347
NC_012984:520000Lactobacillus plantarum JDM1, complete genome76.5012 %Subject ←→ Query29.4929
NC_013199:1407742*Lactobacillus rhamnosus Lc 705, complete genome77.1722 %Subject ←→ Query29.5477
NC_013199:392450*Lactobacillus rhamnosus Lc 705, complete genome76.0294 %Subject ←→ Query29.6644
NC_010999:623489Lactobacillus casei, complete genome75.0888 %Subject ←→ Query29.8391
NC_015975:752927*Lactobacillus ruminis ATCC 27782 chromosome, complete genome75.1072 %Subject ←→ Query30.478
NC_013199:2386924Lactobacillus rhamnosus Lc 705, complete genome76.3143 %Subject ←→ Query30.5957
NC_013198:1030970*Lactobacillus rhamnosus GG, complete genome75.1532 %Subject ←→ Query30.8386
NC_010999:561914Lactobacillus casei, complete genome90.5392 %Subject ←→ Query30.939
NC_007576:1564739*Lactobacillus sakei subsp. sakei 23K, complete genome75.0551 %Subject ←→ Query31.0118
NC_015214:1458480Lactobacillus acidophilus 30SC chromosome, complete genome78.1066 %Subject ←→ Query31.0242
NC_013198:394000*Lactobacillus rhamnosus GG, complete genome78.0484 %Subject ←→ Query31.056
NC_008322:2077628*Shewanella sp. MR-7, complete genome75.5423 %Subject ←→ Query31.0943
NC_008529:1133665Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete76.0233 %Subject ←→ Query31.098
NC_010999:1381497*Lactobacillus casei, complete genome78.943 %Subject ←→ Query31.3851
NC_015602:1949610Lactobacillus kefiranofaciens ZW3 chromosome, complete genome75.7629 %Subject ←→ Query31.6209
NC_008054:1117703*Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete75.0766 %Subject ←→ Query31.8215
NC_004668:3184319*Enterococcus faecalis V583, complete genome75.5392 %Subject ←→ Query31.8458
NC_013199:1966334*Lactobacillus rhamnosus Lc 705, complete genome77.932 %Subject ←→ Query31.9404
NC_014727:889132Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,75.6127 %Subject ←→ Query32.2258
NC_013198:1095591Lactobacillus rhamnosus GG, complete genome86.2745 %Subject ←→ Query32.5093
NC_008526:1924761Lactobacillus casei ATCC 334, complete genome83.508 %Subject ←→ Query32.8703
NC_014334:1954333Lactobacillus casei str. Zhang chromosome, complete genome75.4167 %Subject ←→ Query33.3293
NC_013198:1538792*Lactobacillus rhamnosus GG, complete genome79.712 %Subject ←→ Query33.5442
NC_008577:2511326Shewanella sp. ANA-3 chromosome 1, complete sequence75.4596 %Subject ←→ Query33.6393
NC_013199:2058857*Lactobacillus rhamnosus Lc 705, complete genome75.5392 %Subject ←→ Query33.7873
NC_013199:845000Lactobacillus rhamnosus Lc 705, complete genome85.7138 %Subject ←→ Query33.8589
NC_008054:201075*Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete75.0429 %Subject ←→ Query34.2781
NC_014727:1220869Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,78.0024 %Subject ←→ Query34.3211
NC_008322:1186000*Shewanella sp. MR-7, complete genome76.8627 %Subject ←→ Query34.6086
NC_008577:2402165Shewanella sp. ANA-3 chromosome 1, complete sequence75.4504 %Subject ←→ Query34.8689
NC_002505:1892430*Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete77.2702 %Subject ←→ Query35.2857
NC_004459:2025436Vibrio vulnificus CMCP6 chromosome I, complete sequence75.046 %Subject ←→ Query35.3621
NC_010610:795975Lactobacillus fermentum IFO 3956, complete genome75.6189 %Subject Query44.835