Pre_GI: OUP Neighbours

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Query: NC_008526:343445 Lactobacillus casei ATCC 334, complete genome

D: 41.5674

Host Lineage: Lactobacillus casei; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain was isolated from Emmental cheese. Starter culture for milk fermentation and flavor development of cheese. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, fermented milks, and other products, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully created, cultivated, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus casei is used as a starter culture during milk fermentation and for the flavor development of certain bacterial-ripened cheeses.

Number of Neighbours: 8




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_014334:99000*Lactobacillus casei str. Zhang chromosome, complete genome75.4933 %Subject Query29.7551
NC_015572:3091707*Methylomonas methanica MC09 chromosome, complete genome75.4473 %Subject ←→ Query32.4266
NC_010999:252605Lactobacillus casei, complete genome75.8854 %Subject ←→ Query32.847
NC_008526:250000*Lactobacillus casei ATCC 334, complete genome75.0735 %Subject ←→ Query35.0097
NC_014334:267409*Lactobacillus casei str. Zhang chromosome, complete genome76.296 %Subject ←→ Query35.3356
NC_011138:3182807*Alteromonas macleodii 'Deep ecotype', complete genome75.3922 %Subject ←→ Query44.8872
NC_008573:195317Shewanella sp. ANA-3 plasmid 1, complete sequence76.6023 %Subject ←→ Query46.5154
NC_008781:4178115*Polaromonas naphthalenivorans CJ2, complete genome75.7292 %Subject ←→ Query49.0709