Pre_GI: OUP Neighbours

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Query: NC_008526:250000 Lactobacillus casei ATCC 334, complete genome

D: 35.0097

Host Lineage: Lactobacillus casei; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain was isolated from Emmental cheese. Starter culture for milk fermentation and flavor development of cheese. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, fermented milks, and other products, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully created, cultivated, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus casei is used as a starter culture during milk fermentation and for the flavor development of certain bacterial-ripened cheeses.

Number of Neighbours: 24

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_010999:2516000Lactobacillus casei, complete genome79.3903 %Subject ←→ Query27.1158
NC_014334:1848340*Lactobacillus casei str. Zhang chromosome, complete genome77.3989 %Subject ←→ Query27.6265
NC_010999:2450974*Lactobacillus casei, complete genome79.4608 %Subject ←→ Query28.2344
NC_014366:478000*Gamma proteobacterium HdN1, complete genome76.4767 %Subject ←→ Query28.2485
NC_008526:74500*Lactobacillus casei ATCC 334, complete genome81.4614 %Subject ←→ Query28.9383
NC_014334:99000*Lactobacillus casei str. Zhang chromosome, complete genome80.4994 %Subject ←→ Query29.7551
NC_013198:511795Lactobacillus rhamnosus GG, complete genome75.913 %Subject ←→ Query31.25
NC_013199:1966334*Lactobacillus rhamnosus Lc 705, complete genome77.4112 %Subject ←→ Query31.9404
NC_014334:589526Lactobacillus casei str. Zhang chromosome, complete genome76.8689 %Subject ←→ Query32.7578
NC_008577:4183361Shewanella sp. ANA-3 chromosome 1, complete sequence75.1593 %Subject ←→ Query32.7699
NC_010999:252605Lactobacillus casei, complete genome91.3266 %Subject ←→ Query32.847
NC_015572:1Methylomonas methanica MC09 chromosome, complete genome78.2506 %Subject ←→ Query34.0009
NC_014334:267409*Lactobacillus casei str. Zhang chromosome, complete genome93.1587 %Subject ←→ Query35.3356
NC_010554:2646806Proteus mirabilis HI4320, complete genome78.1679 %Subject ←→ Query35.3988
NC_008526:1822000*Lactobacillus casei ATCC 334, complete genome83.7898 %Subject ←→ Query35.8686
NC_010999:1979989*Lactobacillus casei, complete genome85.5331 %Subject ←→ Query36.6636
NC_014334:1775781*Lactobacillus casei str. Zhang chromosome, complete genome85.7966 %Subject ←→ Query36.9239
NC_015572:4916430Methylomonas methanica MC09 chromosome, complete genome76.2653 %Subject ←→ Query37.6362
NC_014334:769205*Lactobacillus casei str. Zhang chromosome, complete genome81.8811 %Subject ←→ Query39.1896
NC_008526:343445Lactobacillus casei ATCC 334, complete genome75.0735 %Subject ←→ Query41.5674
NC_015567:1660462Serratia sp. AS9 chromosome, complete genome75.481 %Subject ←→ Query42.6158
NC_015566:1659288Serratia sp. AS12 chromosome, complete genome75.4044 %Subject ←→ Query44.7005
NC_008573:195317Shewanella sp. ANA-3 plasmid 1, complete sequence75.3156 %Subject Query46.5154
NC_010611:240839Acinetobacter baumannii ACICU, complete genome75.1532 %Subject Query48.2217