Pre_GI: OUP Neighbours

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Query: NC_007951:570500 Burkholderia xenovorans LB400 chromosome 1, complete sequence

D: 54.2081

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.

Number of Neighbours: 35




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_012660:2684981Pseudomonas fluorescens SBW25 chromosome, complete genome75.0031 %Subject Query28.2792
NC_009138:467268Herminiimonas arsenicoxydans, complete genome75.3676 %Subject Query29.4022
NC_015856:4301230Collimonas fungivorans Ter331 chromosome, complete genome76.2347 %Subject Query29.5257
NC_009138:2110500*Herminiimonas arsenicoxydans, complete genome75.1899 %Subject Query29.5401
NC_004741:2593012Shigella flexneri 2a str. 2457T, complete genome75.6434 %Subject Query30.2225
NC_009138:2242470*Herminiimonas arsenicoxydans, complete genome76.6789 %Subject Query30.463
NC_013722:1689125*Xanthomonas albilineans, complete genome76.0355 %Subject Query30.6852
NC_014394:1815638*Gallionella capsiferriformans ES-2 chromosome, complete genome75.1654 %Subject Query30.8123
NC_009138:3153576Herminiimonas arsenicoxydans, complete genome75.6158 %Subject Query31.0554
NC_015856:940625*Collimonas fungivorans Ter331 chromosome, complete genome75.1716 %Subject Query32.4073
NC_014394:2228470*Gallionella capsiferriformans ES-2 chromosome, complete genome77.4295 %Subject Query32.466
NC_014394:93344Gallionella capsiferriformans ES-2 chromosome, complete genome76.2561 %Subject Query32.5024
NC_003305:1743939Agrobacterium tumefaciens str. C58 chromosome linear, complete75.0735 %Subject Query33.7678
NC_015856:3170771*Collimonas fungivorans Ter331 chromosome, complete genome75.095 %Subject Query33.8436
NC_014722:1Burkholderia rhizoxinica HKI 454, complete genome77.5888 %Subject Query33.911
NC_014394:1325616Gallionella capsiferriformans ES-2 chromosome, complete genome75.046 %Subject Query34.0576
NC_015856:1Collimonas fungivorans Ter331 chromosome, complete genome75.288 %Subject Query34.0689
NC_015856:764651*Collimonas fungivorans Ter331 chromosome, complete genome75.3799 %Subject Query34.1925
NC_009138:1583988Herminiimonas arsenicoxydans, complete genome76.9577 %Subject Query34.302
NC_015856:1733500Collimonas fungivorans Ter331 chromosome, complete genome75.1654 %Subject Query34.3939
NC_009138:1843998*Herminiimonas arsenicoxydans, complete genome75.3707 %Subject Query34.9668
NC_009667:1203861*Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequence76.2531 %Subject Query36.751
NC_015856:268034Collimonas fungivorans Ter331 chromosome, complete genome75.6985 %Subject Query38.5264
NC_004578:5916711Pseudomonas syringae pv. tomato str. DC3000, complete genome75.3309 %Subject Query39.1576
NC_003384:157158Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid75.8854 %Subject Query40.728
NC_006526:1976779Zymomonas mobilis subsp. mobilis ZM4, complete genome75.3922 %Subject Query41.6344
NC_009667:1371924*Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequence76.2806 %Subject Query42.1148
NC_003308:1Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence75.7169 %Subject Query43.6752
NC_015567:547500*Serratia sp. AS9 chromosome, complete genome75.5178 %Subject ←→ Query46.163
NC_015566:547387*Serratia sp. AS12 chromosome, complete genome75.6066 %Subject ←→ Query47.0705
NC_009446:174951Dichelobacter nodosus VCS1703A, complete genome75.5178 %Subject ←→ Query47.6128
NC_011027:303000*Chlorobaculum parvum NCIB 8327, complete genome75.0214 %Subject ←→ Query47.9407
NC_008781:4178115*Polaromonas naphthalenivorans CJ2, complete genome76.9547 %Subject ←→ Query49.0709
NC_002932:1798869*Chlorobium tepidum TLS, complete genome76.4982 %Subject ←→ Query50.6144
NC_010410:3606826Acinetobacter baumannii AYE, complete genome76.011 %Subject ←→ Query53.266