Pre_GI: OUP Neighbours

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Query: NC_007604:743738 Synechococcus elongatus PCC 7942, complete genome

D: 45.8397

Host Lineage: Synechococcus elongatus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain is a freshwater organism and is extensively studied due to its circadian clock which controls the expression of upwards of 800 genes during a 24 hour period. These unicellular cyanobacteria are also known as blue green algae and along with Prochlorococcus are responsible for a large part of the carbon fixation that occurs in marine environments. Synechococcus have a broader distribution in the ocean and are less abundant in oligotrophic (low nutrient) regions. These organism utilize photosystem I and II to capture light energy. They are highly adapted to marine environments and some strains have evolved unique motility systems in order to propel themselves towards areas that contain nitrogenous compounds. An obligate photoautotroph, it has been studied extensively by an international research community with respect to acquisition of organic carbon, transport and regulation of nitrogen compounds, adaptation to nutrient stresses, and reponse to light intensity.

Number of Neighbours: 44

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_008209:761487*Roseobacter denitrificans OCh 114, complete genome75.3983 %Subject Query27.0776
NC_004578:4781326Pseudomonas syringae pv. tomato str. DC3000, complete genome76.1397 %Subject Query27.1046
NC_004578:20738Pseudomonas syringae pv. tomato str. DC3000, complete genome78.4375 %Subject Query27.4072
NC_004578:5192110Pseudomonas syringae pv. tomato str. DC3000, complete genome77.6164 %Subject Query27.7081
NC_007604:1183497Synechococcus elongatus PCC 7942, complete genome79.2065 %Subject Query28.0399
NC_007604:168176Synechococcus elongatus PCC 7942, complete genome82.2488 %Subject Query28.1524
NC_012660:2684981Pseudomonas fluorescens SBW25 chromosome, complete genome78.4467 %Subject Query28.2792
NC_006576:414696Synechococcus elongatus PCC 6301, complete genome80.723 %Subject Query29.5841
NC_002947:4994335Pseudomonas putida KT2440, complete genome76.5257 %Subject Query29.604
NC_004578:6334735Pseudomonas syringae pv. tomato str. DC3000, complete genome75.7843 %Subject Query29.7522
NC_013446:2961647*Comamonas testosteroni CNB-2, complete genome75.0398 %Subject Query29.9468
NC_008209:1097607*Roseobacter denitrificans OCh 114, complete genome76.0233 %Subject Query30.256
NC_006576:1435422Synechococcus elongatus PCC 6301, complete genome82.2917 %Subject Query31.0329
NC_004578:568236*Pseudomonas syringae pv. tomato str. DC3000, complete genome75.2941 %Subject Query31.2345
NC_007005:1636875Pseudomonas syringae pv. syringae B728a, complete genome77.0466 %Subject Query31.3458
NC_004578:5336773*Pseudomonas syringae pv. tomato str. DC3000, complete genome77.546 %Subject Query31.4169
NC_005773:866157*Pseudomonas syringae pv. phaseolicola 1448A, complete genome76.4951 %Subject Query31.8962
NC_002947:2157648Pseudomonas putida KT2440, complete genome76.9393 %Subject Query32.1856
NC_006576:2610565*Synechococcus elongatus PCC 6301, complete genome79.4056 %Subject Query32.4351
NC_007908:1252189Rhodoferax ferrireducens T118, complete genome75.2941 %Subject Query33.0482
NC_005773:5636606Pseudomonas syringae pv. phaseolicola 1448A, complete genome75.1317 %Subject Query33.1192
NC_007604:1442500Synechococcus elongatus PCC 7942, complete genome79.1023 %Subject Query33.1617
NC_007604:1383192*Synechococcus elongatus PCC 7942, complete genome76.0784 %Subject Query33.2502
NC_013720:2898639Pirellula staleyi DSM 6068, complete genome75.0735 %Subject Query33.2989
NC_006576:161112Synechococcus elongatus PCC 6301, complete genome76.9332 %Subject Query33.8572
NC_007604:1586243*Synechococcus elongatus PCC 7942, complete genome79.1207 %Subject Query33.923
NC_002947:4167500Pseudomonas putida KT2440, complete genome76.8811 %Subject Query34.0231
NC_006576:2683467Synechococcus elongatus PCC 6301, complete genome76.4461 %Subject Query34.6581
NC_006576:2073163Synechococcus elongatus PCC 6301, complete genome78.4743 %Subject Query35.0481
NC_007005:98488*Pseudomonas syringae pv. syringae B728a, complete genome76.1612 %Subject Query35.1526
NC_007604:1875268*Synechococcus elongatus PCC 7942, complete genome82.3989 %Subject Query35.572
NC_006576:217697Synechococcus elongatus PCC 6301, complete genome78.6366 %Subject Query35.6639
NC_007604:2213659Synechococcus elongatus PCC 7942, complete genome81.106 %Subject ←→ Query35.9302
NC_006576:12230*Synechococcus elongatus PCC 6301, complete genome79.617 %Subject ←→ Query36.2947
NC_006576:1743500*Synechococcus elongatus PCC 6301, complete genome77.6961 %Subject ←→ Query36.7017
NC_007604:1967770Synechococcus elongatus PCC 7942, complete genome82.5214 %Subject ←→ Query37.3099
NC_007005:4515853Pseudomonas syringae pv. syringae B728a, complete genome76.5962 %Subject ←→ Query37.5214
NC_006576:2423250Synechococcus elongatus PCC 6301, complete genome80.5208 %Subject ←→ Query37.6034
NC_006576:2328427Synechococcus elongatus PCC 6301, complete genome79.8162 %Subject ←→ Query37.7448
NC_007604:2555000*Synechococcus elongatus PCC 7942, complete genome78.2016 %Subject ←→ Query37.9152
NC_007604:1145373*Synechococcus elongatus PCC 7942, complete genome79.0074 %Subject ←→ Query38.5822
NC_006576:456569*Synechococcus elongatus PCC 6301, complete genome80.4105 %Subject ←→ Query39.2636
NC_016002:1975000*Pseudogulbenkiania sp. NH8B, complete genome78.3456 %Subject ←→ Query40.685
NC_007604:41495Synechococcus elongatus PCC 7942, complete genome75.3493 %Subject ←→ Query44.7466