Pre_GI: OUP Neighbours

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Query: NC_007492:3954345 Pseudomonas fluorescens PfO-1, complete genome

D: 47.3368

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from agricultural loam (sand, clay, and organic matter) soil in 1988 by Compeau et al. and is well adapted to soil environments. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants.

Number of Neighbours: 11




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_004578:4781326Pseudomonas syringae pv. tomato str. DC3000, complete genome76.394 %Subject Query27.1046
NC_004578:5192110Pseudomonas syringae pv. tomato str. DC3000, complete genome75.8241 %Subject Query27.7081
NC_002947:4994335Pseudomonas putida KT2440, complete genome75.3278 %Subject Query29.604
NC_004578:6334735Pseudomonas syringae pv. tomato str. DC3000, complete genome75.1256 %Subject Query29.7522
NC_007005:1636875Pseudomonas syringae pv. syringae B728a, complete genome76.7126 %Subject Query31.3458
NC_004578:2560473Pseudomonas syringae pv. tomato str. DC3000, complete genome78.4222 %Subject Query32.524
NC_007908:1252189Rhodoferax ferrireducens T118, complete genome75.1256 %Subject Query33.0482
NC_005773:4539751*Pseudomonas syringae pv. phaseolicola 1448A, complete genome75.2022 %Subject Query34.6607
NC_007005:4515853Pseudomonas syringae pv. syringae B728a, complete genome76.011 %Subject ←→ Query37.5214
NC_007516:1439537*Synechococcus sp. CC9605, complete genome75.2083 %Subject ←→ Query47.9752
NC_007516:1618033Synechococcus sp. CC9605, complete genome75.0092 %Subject ←→ Query50.4569